[Home] | [Total List]

[192064_s_at] sodium channel like

Description F02D10.5 /REP_DB=WormBase Gene ID /WP=CE27118 /GEN=flr-1 /TR=Q19115 /GB=CAA91936.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=sodium channel like
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 81      6grp_total > 70      4grp_total > 12      6grp_highest_sub > 04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 320
(-0.9)
P 		393.4
(2)
P 		266.2
(-3)
P 		417.5
(3)
P 		151
B 302.1
(-3)
P 		352.4
(-1.3)
P 		308.7
(-2.8)
P 		475.7
(3)
P 		174
C 429.5
(3)
P 		261.2
(-3)
P 		321.6
(-0.8)
P 		425.2
(2.8)
P 		168
avr 350.5
(-0.8) 		335.7
(-1.4) 		298.8
(-3) 		439.5
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 260.5
(-2)
P 		281.1
(-0.7)
P 		245
(-3)
P 		341.1
(3)
P 		248.7
(-2.8)
P 		259.1
(-2.1)
P 		96
B 222.6
(-3)
P 		229.8
(-2.5)
P 		301.5
(2.1)
P 		315.1
(3)
P 		231.6
(-2.4)
P 		233
(-2.3)
P 		93
C 256
(-1.7)
P 		318.6
(0.7)
P 		314.6
(0.5)
P 		380.5
(3)
P 		221.6
(-3)
P 		261.4
(-1.5)
P 		159
avr 246.4
(-2.3) 		276.5
(-0.7) 		287
(-0.2) 		345.6
(3) 		234
(-3) 		251.2
(-2.1) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 116.5
(3)
P 		85.4
(-0.4)
P 		69.6
(-2.1)
P 		61.1
(-3)
P 		55
B 96.3
(2)
P 		87
(0.1)
P 		71.5
(-3)
P 		101.4
(3)
P 		30
C 142.2
(3)
P 		75.1
(-2.7)
P 		112.1
(0.4)
P 		71.7
(-3)
P 		71
avr 118.3
(3) 		82.5
(-2.3) 		84.4
(-2.1) 		78.1
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 48
(-3)
P 		100
(3)
P 		53.4
(-2.4)
P 		86.5
(1.4)
P 		75
(0.1)
P 		63.1
(-1.3)
P 		52
B 77.5
(-1.8)
P 		76.5
(-2.1)
P 		73.2
(-3)
P 		83.5
(-0)
P 		94.1
(3)
P 		86.9
(0.9)
P 		21
C 94.9
(2.5)
P 		97.2
(3)
P 		80.1
(-1)
P 		76.5
(-1.9)
P 		71.7
(-3)
P 		87.5
(0.7)
P 		26
avr 73.5
(-1.8) 		91.2
(3) 		68.9
(-3) 		82.2
(0.6) 		80.3
(0.1) 		79.2
(-0.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192064_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17537
Sequence Type Exemplar sequence
Representative Public ID F02D10.5 NCBI
Target Description F02D10.5 /REP_DB=WormBase Gene ID /WP=CE27118 /GEN=flr-1 /TR=Q19115 /GB=CAA91936.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=sodium channel like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077842 NCBI Caenorhabditis elegans FLuoRide resistant family member (flr-1) (flr-1) mRNA, complete cds. 11/11 None
SNAP00000039142 ENSEMBL cdna:SNAP chromosome:CEL140:X:13452627:13454540:-1 9/11 None
GENEFINDER00000039149 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13452627:13456454:-1 11/11 None
F02D10.5 ENSEMBL cdna:known chromosome:CEL140:X:13452591:13456463:-1 gene:F02D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13452626-13456140(-) 96.57 100.0
Public Domain and Genome References
Gene Title sodium channel like
Gene Symbol flr-1
Ensembl F02D10.5
Entrez Gene 181468 Entrez gene
SwissProt Q19115 EMBL-EBI
WormBase CE27118 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
5272 sodium channel activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91936 Hypothetical protein F02D10.5 [Caenorhabditis elegans] ref|NP_510243.1| FLuoRide resistant family member (flr-1) [Caenorhabditis elegans] dbj|BAA33488.1| FLR-1 [Caenorhabditis elegans] 0.0
blast CAE61442 Hypothetical protein CBG05329 [Caenorhabditis briggsae] 0.0
blast CAE61442 Hypothetical protein CBG05329 [Caenorhabditis briggsae] 1.0E-146
blast CAE61116 Hypothetical protein CBG04873 [Caenorhabditis briggsae] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.0E-126
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.9E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510243.1 1 44-66
F02D10.5 1 44-66
GENEFINDER00000039149 1 44-66
Sequence
Target Sequence 
>C. ELEGANS:192064_S_AT
ggtagcatgggtctattcttgggtatgagtacggtcacccttcttgaaattttcatttac
ctcttcaaatcagtctggggaactgtaaactcaactaggcagcaacaattcgtggatgca
gttgctgaggaggagaaggagagatcagaaagtattgttatcattcaaaatggaaggaat
gatgatatggacgaccagaagccatcaaggttccccggagccgatcgaaaattatctggt
aactcaattcatattcatttggatcgaagaaatagtcgtatgattcgtggcggggattta
tcagctgcatcccgcggatccgtcagtattccatctcaacttttatcaccactctccaga
cacaacaggcaatcaattagctatggtcaactaggcagaaaagtgtctgctattggtatt
cctcttcaaccaaatcacgacaccgttgaaagtgggacttctcttatgcctccaaagtcg
ccaatccgaagatgcagtacttcaactacgccgtcaatgctgaccagaaaactgagtttc
gcaagccagcagtcagatcctgctcaaccagcacatcaatctcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGCATGGGTCTATTCTTGGGTA 88 505 1222 Antisense
TATGAGTACGGTCACCCTTCTTGAA 90 159 1245 Antisense
ACGACCAGAAGCCATCAAGGTTCCC 155 93 1412 Antisense
GTGGCGGGGATTTATCAGCTGCATC 96 491 1508 Antisense
CCACTCTCCAGACACAACAGGCAAT 403 273 1570 Antisense
AAGTGTCTGCTATTGGTATTCCTCT 445 159 1622 Antisense
GACTTCTCTTATGCCTCCAAAGTCG 38 371 1677 Antisense
AGATGCAGTACTTCAACTACGCCGT 475 65 1711 Antisense
TCAACTACGCCGTCAATGCTGACCA 331 631 1723 Antisense
AGCCAGCAGTCAGATCCTGCTCAAC 404 83 1765 Antisense
CTCAACCAGCACATCAATCTCGAAA 350 227 1784 Antisense
Sequence Source Affymetrix Proprietary Database