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[192061_at] SCP-like extracellular Proteins

Description F57B7.2 /REP_DB=WormBase Gene ID /WP=CE05990 /TR=Q20928 /GB=CAA98491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 357.2
(2.1)
P 		386.3
(3)
P 		280.9
(-0.4)
P 		197.8
(-3)
P 		189
B 392.6
(2.6)
P 		408.3
(3)
P 		291.3
(0.4)
P 		142.8
(-3)
P 		266
C 334.9
(0.4)
P 		443.9
(3)
P 		357.6
(1)
P 		190.2
(-3)
P 		254
avr 361.6
(1.7) 		412.8
(3) 		309.9
(0.4) 		176.9
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 420.8
(2.8)
P 		396.7
(2.3)
P 		430.6
(3)
P 		299.3
(0.3)
P 		269.6
(-0.3)
P 		134
(-3)
P 		297
B 431.3
(3)
P 		389.5
(2)
P 		385.8
(2)
P 		367.2
(1.5)
P 		250.6
(-1.2)
P 		171
(-3)
P 		260
C 416
(3)
P 		390
(2.4)
P 		285.1
(-0)
P 		293.9
(0.2)
P 		234.4
(-1.2)
P 		157.1
(-3)
P 		259
avr 422.7
(3) 		392.1
(2.3) 		367.2
(1.8) 		320.1
(0.7) 		251.5
(-0.8) 		154
(-3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 130
(3)
P 		83.9
(0.3)
P 		73.4
(-0.4)
P 		28.9
(-3)
P 		101
B 125.2
(3)
P 		100.8
(1.5)
P 		67.5
(-0.7)
P 		30.4
(-3)
P 		95
C 110.9
(2)
P 		127.6
(3)
P 		124.7
(2.8)
P 		32.1
(-3)
P 		96
avr 122
(3) 		104.1
(1.8) 		88.5
(0.8) 		30.5
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 77.6
(-0.5)
P 		141.1
(3)
P 		93.8
(0.4)
P 		75.9
(-0.6)
P 		81.4
(-0.3)
P 		32.6
(-3)
P 		109
B 150.1
(3)
P 		129.7
(1.6)
P 		93.7
(-0.9)
P 		97.2
(-0.7)
P 		101.8
(-0.4)
P 		63.7
(-3)
P 		86
C 154.2
(3)
P 		119
(0.9)
P 		72.6
(-1.8)
P 		59.1
(-2.6)
P 		75.9
(-1.6)
P 		52.6
(-3)
P 		102
avr 127.3
(2.8) 		129.9
(3) 		86.7
(-0.2) 		77.4
(-0.9) 		86.4
(-0.3) 		49.6
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14740
Sequence Type Exemplar sequence
Representative Public ID F57B7.2 NCBI
Target Description F57B7.2 /REP_DB=WormBase Gene ID /WP=CE05990 /TR=Q20928 /GB=CAA98491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073499 NCBI Caenorhabditis elegans F57B7.2 (F57B7.2) mRNA, complete cds. 11/11 None
SNAP00000018330 ENSEMBL cdna:SNAP chromosome:CEL140:V:11444724:11446068:-1 11/11 None
GENEFINDER00000018333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11444724:11446068:-1 11/11 None
F57B7.2 ENSEMBL cdna:known chromosome:CEL140:V:11444724:11446070:-1 gene:F57B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11444723-11446068(-) 100.0 100.0
Public Domain and Genome References
Gene Title SCP-like extracellular Proteins
Ensembl F57B7.2
Entrez Gene 186438 Entrez gene
SwissProt Q20928 EMBL-EBI
WormBase CE05990 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98491 Hypothetical protein F57B7.2 [Caenorhabditis elegans] ref|NP_505900.1| F57B7.2 [Caenorhabditis elegans] 1.0E-161
blast CAE75246 Hypothetical protein CBG23203 [Caenorhabditis briggsae] 1.0E-156
blast XP_784792 PREDICTED: similar to pathogenesis-related (5L922) [Strongylocentrotus purpuratus] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.7E-31
Sequence
Target Sequence 
>C. ELEGANS:192061_AT
gcaaatacactgcccttagcgaagtgaattttcaacgatcttgcctagatgctcataatg
agtgcaggcaaagatacggaaacgagaatctttgttggtcaaccgaattggctgaaatgg
ctcatgcgtgggccgtgaagttggcagatagagggagagtattgtatccagagttgcctg
gaattggagagaatttaattttgaaagaggcaaatgaacagtcacatttaccaactggac
aagaagttattcaagaatgggaaaaagaagcacagttctttgatttcgacaaaccgcgat
ggaatccaaaatgtcaacgattttcacaagttgtttggaaagatacaacagaacttggcg
ctgcacggtattggaacacagcaaataattgtgtagctgttgtctgcttttatcgtccag
cgggaaattcaaatgcacccggagaatttgcttcaaatgttccatccagagattgttcaa
tgtcaccaattcgaaacttgggaactcaactaaaacgccacgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATACACTGCCCTTAGCGAAGT 586 317 320 Antisense
TCAACGATCTTGCCTAGATGCTCAT 274 631 351 Antisense
TGGCTGAAATGGCTCATGCGTGGGC 312 543 428 Antisense
ATGCGTGGGCCGTGAAGTTGGCAGA 57 41 443 Antisense
GAGAGTATTGTATCCAGAGTTGCCT 394 395 474 Antisense
GATACAACAGAACTTGGCGCTGCAC 435 423 661 Antisense
TGGCGCTGCACGGTATTGGAACACA 248 545 675 Antisense
CTGTTGTCTGCTTTTATCGTCCAGC 369 239 716 Antisense
AAATGCACCCGGAGAATTTGCTTCA 142 119 750 Antisense
TTTGCTTCAAATGTTCCATCCAGAG 464 667 766 Antisense
GAACTCAACTAAAACGCCACGTCAC 83 349 821 Antisense
Sequence Source Affymetrix Proprietary Database