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[192060_at]

Description ZK742.1 /REP_DB=WormBase Gene ID /WP=CE23467 /TR=Q23089 /GB=AAB04981.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chromosome maintenance protien
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 1260.9
(1.1)
P 		715.1
(-2.2)
P 		581.7
(-3)
P 		1581.1
(3)
P 		999
B 1025.1
(0.2)
P 		670
(-2.7)
P 		636.4
(-3)
P 		1370.2
(3)
P 		734
C 1071.4
(0.7)
P 		735.1
(-2.4)
P 		671.6
(-3)
P 		1314.7
(3)
P 		643
avr 1119.1
(0.7) 		706.7
(-2.4) 		629.9
(-3) 		1422
(3) 		792

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1052
1 2 3 4 5 6 range
A 1211.3
(3)
P 		994.9
(1.2)
P 		472.6
(-3)
P 		543.7
(-2.4)
P 		512.4
(-2.7)
P 		991.1
(1.2)
P 		739
B 1328
(3)
P 		800.7
(-0.6)
P 		600.5
(-2)
P 		694.1
(-1.3)
P 		446.5
(-3)
P 		764.8
(-0.8)
P 		882
C 1498.6
(3)
P 		848.5
(-1.2)
P 		772.6
(-1.7)
P 		566.6
(-3)
P 		569.5
(-3)
P 		800.7
(-1.5)
P 		932
avr 1346
(3) 		881.4
(-0.3) 		615.2
(-2.2) 		601.5
(-2.3) 		509.5
(-3) 		852.2
(-0.5) 		837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 459.1
(3)
P 		155.2
(-2.9)
P 		152.1
(-3)
P 		231.4
(-1.5)
P 		307
B 326.9
(3)
P 		165.5
(-2.4)
P 		147.5
(-3)
P 		292
(1.8)
P 		179
C 354.7
(3)
P 		211.3
(-3)
P 		234.1
(-2)
P 		221.7
(-2.6)
P 		143
avr 380.2
(3) 		177.3
(-3) 		177.9
(-3) 		248.4
(-0.9) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 223.3
(-0.1)
P 		353.8
(3)
P 		102.9
(-3)
P 		137.9
(-2.2)
P 		154.6
(-1.8)
P 		241.3
(0.3)
P 		251
B 462.1
(3)
P 		266.5
(-0.7)
P 		145.8
(-3)
P 		183.8
(-2.3)
P 		181.4
(-2.3)
P 		285.2
(-0.4)
P 		316
C 555.5
(3)
P 		258.9
(-1)
P 		196.6
(-1.9)
P 		113.9
(-3)
P 		184.3
(-2)
P 		268
(-0.9)
P 		442
avr 413.6
(3) 		293.1
(0.3) 		148.4
(-2.9) 		145.2
(-3) 		173.4
(-2.4) 		264.8
(-0.3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12201
Sequence Type Exemplar sequence
Representative Public ID ZK742.1 NCBI
Target Description ZK742.1 /REP_DB=WormBase Gene ID /WP=CE23467 /TR=Q23089 /GB=AAB04981.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chromosome maintenance protien
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171484(11), NM_171485(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171484 NCBI Caenorhabditis elegans IMportin Beta family member (imb-4) (imb-4) mRNA, complete cds. 11/11 None
NM_171485 NCBI Caenorhabditis elegans IMportin Beta family member (imb-4) (imb-4) mRNA, complete cds. 9/11 None
SNAP00000028066 ENSEMBL cdna:SNAP chromosome:CEL140:V:7814996:7816460:1 9/11 None
GENEFINDER00000028073 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7815202:7816460:1 9/11 None
ZK742.1a.3 ENSEMBL cdna:known chromosome:CEL140:V:7807654:7817213:1 gene:ZK742.1 11/11 None
ZK742.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:7807656:7817213:1 gene:ZK742.1 11/11 A 
ZK742.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:7807671:7817213:1 gene:ZK742.1 11/11 A 
ZK742.1b ENSEMBL cdna:known chromosome:CEL140:V:7812405:7816460:1 gene:ZK742.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028063 2/11 Cross Hyb Matching Probes None
GENEFINDER00000028069 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7807954-7816461(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK742.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04981 Importin beta family protein 4, isoform a [Caenorhabditis elegans] ref|NP_741567.1| IMportin Beta family member (imb-4) [Caenorhabditis elegans] 0.0
blast CAE73178 Hypothetical protein CBG20576 [Caenorhabditis briggsae] 0.0
blast XP_531839 PREDICTED: similar to exportin 1, CRM1 homolog isoform 1 [Canis familiaris] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001494 EMBL-EBI Importin-beta, N-terminal 2.6E-16
Sequence
Target Sequence 
>C. ELEGANS:192060_AT
ggatcttggaacagtcatcgacgccgtcgtttgggcattccaacacacaatgcgcaatgt
tgcggaaattggtctcgacattctcaaagaattactggctcgtgtctcggagcaggatga
caagatcgctcaaccattctacaagcgttactacattgatcttctgaaacacgtgttagc
agttgcctgtgacagttctcaagttcatgtagccggtttgacctactacgccgaagtgtt
gtgcgcgttattccgtgctccagagttttcgatcaaagttccgctgaacgatgcgaatcc
ttcgcagccgaatattgattacatttatgagcacatcggaggaaacttccaagctcattt
tgataatatgaaccaagatcaaattcgcattatcatcaagggattcttctcgttcaacac
tgaaatctccagtatgcgcaatcatctccgcgactttttgattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTTGGAACAGTCATCGACGCC 142 511 2649 Antisense
CCGTCGTTTGGGCATTCCAACACAC 676 263 2672 Antisense
TACTGGCTCGTGTCTCGGAGCAGGA 543 645 2741 Antisense
ACAAGATCGCTCAACCATTCTACAA 41 115 2768 Antisense
GAAACACGTGTTAGCAGTTGCCTGT 131 357 2814 Antisense
AGTTCTCAAGTTCATGTAGCCGGTT 630 63 2842 Antisense
GACCTACTACGCCGAAGTGTTGTGC 698 381 2868 Antisense
GCGAATCCTTCGCAGCCGAATATTG 244 289 2941 Antisense
GGATTCTTCTCGTTCAACACTGAAA 340 509 3049 Antisense
TCCAGTATGCGCAATCATCTCCGCG 4 589 3076 Antisense
TCATCTCCGCGACTTTTTGATTCAA 431 621 3090 Antisense
Sequence Source Affymetrix Proprietary Database