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[192059_at] Sugar (and other) transporters

Description Y51A2D.4 /REP_DB=WormBase Gene ID /WP=CE19201 /TR=Q9XXR3 /GB=CAA16400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      6grp_highest_nonorm > 32      6grp_total > 21      4grp_total > 57      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 679
1 2 3 4 range
A 130.4
(-2.7)
P 		515.8
(1.2)
P 		691.8
(3)
P 		98.9
(-3)
A 		593
B 170.8
(-2.2)
P 		573.5
(1.4)
P 		753.6
(3)
P 		74.9
(-3)
A 		679
C 127.5
(-3)
M 		695.5
(3)
P 		644.7
(2.5)
P 		131.5
(-3)
A 		568
avr 142.9
(-2.6) 		594.9
(2) 		696.7
(3) 		101.8
(-3) 		595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1009
1 2 3 4 5 6 range
A 1165.7
(0.6)
P 		1514.9
(3)
P 		1242.8
(1.2)
P 		1227.7
(1)
P 		1081.1
(0.1)
P 		631.8
(-3)
P 		883
B 1101.2
(0.6)
P 		1448.9
(3)
P 		1328.1
(2.2)
P 		1293.2
(1.9)
P 		1093.2
(0.6)
P 		567.1
(-3)
P 		882
C 1130.7
(0.3)
P 		1288.5
(1.3)
P 		1576.4
(3)
P 		782.4
(-1.8)
P 		1210.8
(0.8)
P 		575.4
(-3)
P 		1001
avr 1132.5
(0.9) 		1417.4
(3) 		1382.4
(2.7) 		1101.1
(0.7) 		1128.4
(0.9) 		591.4
(-3) 		826
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 47.5
(-1.8)
P 		112
(0.5)
P 		180.8
(3)
P 		14.5
(-3)
A 		166
B 54.5
(-1.5)
P 		141.6
(1.8)
P 		174.6
(3)
P 		16
(-3)
A 		159
C 42.2
(-2.4)
M 		200
(2.3)
P 		224.7
(3)
P 		22.2
(-3)
A 		203
avr 48.1
(-2) 		151.2
(1.6) 		193.4
(3) 		17.6
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 214.9
(-2)
P 		538.8
(3)
P 		270.7
(-1.2)
P 		311.4
(-0.5)
P 		326.2
(-0.3)
P 		153.8
(-3)
P 		385
B 383.2
(0.8)
P 		482.3
(3)
P 		322.5
(-0.5)
P 		342.5
(-0.1)
P 		444.2
(2.2)
P 		211.5
(-3)
P 		271
C 419.1
(3)
P 		393.2
(2.4)
P 		401.2
(2.6)
P 		157.3
(-3)
P 		391.8
(2.4)
P 		192.6
(-2.2)
P 		262
avr 339.1
(0.2) 		471.4
(3) 		331.5
(0.1) 		270.4
(-1.2) 		387.4
(1.2) 		186
(-3) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14498
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.4 NCBI
Target Description Y51A2D.4 /REP_DB=WormBase Gene ID /WP=CE19201 /TR=Q9XXR3 /GB=CAA16400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075222 NCBI Caenorhabditis elegans Y51A2D.4 (Y51A2D.4) mRNA, complete cds. 11/11 None
Y51A2D.4.1 ENSEMBL cdna:known chromosome:CEL140:V:18519363:18526503:1 gene:Y51A2D.4 11/11 None
Y51A2D.4.2 ENSEMBL cdna:known chromosome:CEL140:V:18519363:18526669:1 gene:Y51A2D.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034264 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18520090-18526270(+) 99.34 99.34
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl Y51A2D.4
Entrez Gene 180205 Entrez gene
SwissProt Q9XXR3 EMBL-EBI
WormBase CE19201 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245769_AT sugar transporter family protein at
YEAST_2:1776675_AT Myo-inositol transporter with strong similarity to the major myo-inositol transporter Itr1p, member of the sugar transporter superfamily; expressed constitutively Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16400 Hypothetical protein Y51A2D.4 [Caenorhabditis elegans] ref|NP_507623.1| Y51A2D.4 [Caenorhabditis elegans] 0.0
blast CAE67430 Hypothetical protein CBG12920 [Caenorhabditis briggsae] 0.0
blast CAA16405 Hypothetical protein Y51A2D.5 [Caenorhabditis elegans] ref|NP_507624.1| Y51A2D.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.9E-88
Pfam IPR005828 EMBL-EBI General substrate transporter 1.5E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507623.1 10 21-43,97-116,121-143,158-180,187-209,317-339,346-368,466-488,501-523,533-552
Y51A2D.4.1 10 21-43,97-116,121-143,158-180,187-209,317-339,346-368,466-488,501-523,533-552
Y51A2D.4.2 10 21-43,97-116,121-143,158-180,187-209,317-339,346-368,466-488,501-523,533-552
Sequence
Target Sequence 
>C. ELEGANS:192059_AT
gcaactgcgactattgcgtgaccaccgatgcctgtggcttctgccacgacgccaatacca
aacaggggtactgtcttccagcaggctttgataatcctgaagtgtactctagtacgggct
catgcacaaatagtaatggatccatcgccaacaacttcaaatgggaaaaatactactgtg
acaccaagtacaccctcctgcctatcatcgcctgcggtgtctacctgctcaccttctcgt
cgggcttcacctccctgccctgggtgctcaattcggagttctacccgatgtgggcccgat
ccacgtgtgtcgcaattagtaccacgtcaaattgggtgtttaacctgattattgcgctga
cctacctttcattgactcaagttatcgggaaatacggagcattttggctatacgcgggct
taaccgttattgcgttcattttcatcctgtttttggtgcctgagacaaaaggatactcca
ttgaagaggtagaaatgctatttatgaacaaaaaacaacgccgggaggcagagtccagac
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTGCGACTATTGCGTGACCAC 606 319 1211 Antisense
TACTGTCTTCCAGCAGGCTTTGATA 672 645 1279 Antisense
TGTACTCTAGTACGGGCTCATGCAC 98 557 1313 Antisense
GGTGCTCAATTCGGAGTTCTACCCG 253 501 1473 Antisense
GATCCACGTGTGTCGCAATTAGTAC 547 415 1508 Antisense
TTAACCTGATTATTGCGCTGACCTA 414 683 1550 Antisense
GACCTACCTTTCATTGACTCAAGTT 81 381 1569 Antisense
TTTTGGCTATACGCGGGCTTAACCG 402 611 1612 Antisense
GTTATTGCGTTCATTTTCATCCTGT 509 447 1636 Antisense
TTCATCCTGTTTTTGGTGCCTGAGA 681 687 1651 Antisense
AACGCCGGGAGGCAGAGTCCAGACG 419 143 1727 Antisense
Sequence Source Affymetrix Proprietary Database