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[192058_at] Cell Division control protein

Description R05G6.10 /REP_DB=WormBase Gene ID /WP=CE07423 /TR=Q21758 /GB=AAB00628.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=Cell Division control protein
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 498
1 2 3 4 range
A 733.5
(3)
P 		307.3
(-2.2)
P 		241.3
(-3)
P 		439.7
(-0.6)
P 		492
B 619.1
(3)
P 		304.6
(-1.9)
P 		235.2
(-3)
P 		467.9
(0.6)
P 		384
C 697.6
(3)
P 		328.1
(-2.9)
P 		320
(-3)
P 		441.1
(-1.1)
P 		378
avr 683.4
(3) 		313.3
(-2.3) 		265.5
(-3) 		449.6
(-0.4) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 532.9
(3)
P 		379.1
(-0)
P 		405.2
(0.5)
P 		404.8
(0.5)
P 		374.5
(-0.1)
P 		229.9
(-3)
P 		303
B 479.6
(2.4)
P 		498
(3)
P 		342.6
(-1.8)
P 		452.5
(1.6)
P 		354.4
(-1.4)
P 		303.7
(-3)
P 		194
C 469
(3)
P 		461.8
(2.8)
P 		337.6
(-1.2)
P 		427.7
(1.7)
P 		317.8
(-1.9)
P 		282.6
(-3)
P 		186
avr 493.8
(3) 		446.3
(1.7) 		361.8
(-0.6) 		428.3
(1.2) 		348.9
(-0.9) 		272.1
(-3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 267.1
(3)
P 		66.7
(-2.9)
P 		63.1
(-3)
P 		64.4
(-3)
P 		204
B 197.4
(3)
P 		75.2
(-2.1)
P 		54.5
(-3)
P 		99.7
(-1.1)
P 		143
C 230.9
(3)
P 		94.3
(-2.2)
P 		111.5
(-1.6)
P 		74.4
(-3)
P 		157
avr 231.8
(3) 		78.7
(-2.9) 		76.4
(-3) 		79.5
(-2.9) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 98.2
(0.2)
P 		134.8
(3)
P 		88.2
(-0.5)
P 		102.7
(0.6)
P 		113
(1.3)
P 		56
(-3)
P 		79
B 166.9
(3)
P 		165.8
(2.9)
P 		83.2
(-3)
P 		119.8
(-0.4)
P 		144
(1.4)
P 		113.3
(-0.8)
P 		84
C 173.8
(3)
P 		140.9
(0.8)
P 		85.9
(-3)
P 		86
(-3)
P 		102.8
(-1.8)
P 		94.6
(-2.4)
P 		88
avr 146.3
(2.9) 		147.2
(3) 		85.8
(-3) 		102.8
(-1.3) 		119.9
(0.3) 		88
(-2.8) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9969
Sequence Type Exemplar sequence
Representative Public ID R05G6.10 NCBI
Target Description R05G6.10 /REP_DB=WormBase Gene ID /WP=CE07423 /TR=Q21758 /GB=AAB00628.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=Cell Division control protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068816 NCBI Caenorhabditis elegans R05G6.10 (R05G6.10) mRNA, complete cds. 11/11 None
SNAP00000020441 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7517653:7520313:-1 11/11 None
GENEFINDER00000020446 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7517653:7520703:-1 11/11 None
R05G6.10.1 ENSEMBL cdna:known chromosome:CEL140:IV:7517445:7520349:-1 gene:R05G6.10 11/11 None
R05G6.10.2 ENSEMBL cdna:known chromosome:CEL140:IV:7517445:7520351:-1 gene:R05G6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7517658-7520319(-) 100.0 100.0
Public Domain and Genome References
Gene Title Cell Division control protein
Ensembl R05G6.10
Entrez Gene 177527 Entrez gene
SwissProt Q21758 EMBL-EBI
WormBase CE30103 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1547.1.S1_AT similar to RasGEF domain family, member 1C isoform 1 cfa
CHICKEN:GGA.11298.1.S1_AT RasGEF domain family, member 1C gga
U133_X3P:HS.190559.0.A1_3P_AT RasGEF domain family, member 1C hs
HG-U133_PLUS_2:236748_AT RasGEF domain family, member 1C hs
HG-U133B:236748_AT RasGEF domain family, member 1C hs
HG-U95E:79119_AT RasGEF domain family, member 1C hs
MOE430B:1453093_AT RasGEF domain family, member 1C mm
MOUSE430_2:1453093_AT RasGEF domain family, member 1C mm
RAE230A:1389811_AT RasGEF domain family, member 1C (predicted) rn
RAT230_2:1389811_AT RasGEF domain family, member 1C (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5085 guanyl-nucleotide exchange factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501217 R05G6.10 [Caenorhabditis elegans] gb|AAB00628.2| Hypothetical protein R05G6.10 [Caenorhabditis elegans] 0.0
blast CAE61907 Hypothetical protein CBG05900 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001895 EMBL-EBI Guanine-nucleotide dissociation stimulator CDC25 7.5E-25
Pfam IPR001895 EMBL-EBI Guanine-nucleotide dissociation stimulator CDC25 7.5E-25
Sequence
Target Sequence 
>C. ELEGANS:192058_AT
ggaatcgagttgctgtctttgagtttatgattgatattgccaaagaatgctgtgaaattg
gaaattttaattcaatgatggctattgttgctggattatctcttcctgcagtcagcaggt
taaagaaaacttggtgtcgagtggaaaaagctaaacttgaaatccttcaacaccaactgg
atccatctggaaatttcttgagctaccgagcaacaatcaaagctgctcaatggagagccg
atagtgcaagaggaaatcaacaaaaaattgtgataccattttttgttcttctactcaaag
atttattcttaatctatcacggtcatccaagaattcttccaaatgctcatctcaatttta
tggcatttaatcaattggctgagcagttaagagatgtcattcaatggaaatcaactgttt
gtacatttgaaaagaatccacaagttttacaatatttactgattacatcagtctctggag
aaaaagattcaatgttaatgtcatttgaatgtgaacctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCGAGTTGCTGTCTTTGAGTT 661 531 1232 Antisense
ATGGCTATTGTTGCTGGATTATCTC 463 53 1309 Antisense
TTATCTCTTCCTGCAGTCAGCAGGT 364 677 1327 Antisense
TCCTTCAACACCAACTGGATCCATC 584 591 1394 Antisense
CTGGAAATTTCTTGAGCTACCGAGC 82 241 1418 Antisense
GCTACCGAGCAACAATCAAAGCTGC 328 303 1433 Antisense
GATACCATTTTTTGTTCTTCTACTC 169 425 1503 Antisense
ATTCTTAATCTATCACGGTCATCCA 621 9 1536 Antisense
ATCACGGTCATCCAAGAATTCTTCC 590 27 1547 Antisense
TGCTCATCTCAATTTTATGGCATTT 347 581 1575 Antisense
TGTCATTTGAATGTGAACCTCCAGA 192 559 1730 Antisense
Sequence Source Affymetrix Proprietary Database