[Home] | [Total List]

[192055_at] protein-tyrosine phosphatase

Description ZK757.2 /REP_DB=WormBase Gene ID /WP=CE00468 /TR=SW:P34680 /GB=CAA82388.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 303
(2.7)
P 		308.9
(3)
P 		192.6
(-3)
P 		212
(-2)
A 		116
B 379.8
(3)
P 		239
(-2)
P 		211.1
(-3)
P 		220.5
(-2.7)
P 		169
C 389.1
(3)
P 		318.5
(0.2)
P 		236
(-3)
P 		263.8
(-1.9)
P 		153
avr 357.3
(3) 		288.8
(0.1) 		213.2
(-3) 		232.1
(-2.2) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 359.5
(2.6)
P 		372.8
(3)
P 		299
(0.8)
P 		347
(2.2)
P 		243.9
(-0.8)
P 		169.9
(-3)
P 		203
B 332.9
(2.6)
P 		348.9
(3)
P 		305.7
(1.9)
P 		261.9
(0.7)
P 		293.2
(1.5)
P 		121.1
(-3)
P 		228
C 286.2
(1.1)
P 		353.8
(3)
P 		330.3
(2.3)
P 		288.1
(1.1)
P 		259.3
(0.3)
P 		141.4
(-3)
P 		212
avr 326.2
(2.1) 		358.5
(3) 		311.7
(1.7) 		299
(1.3) 		265.5
(0.4) 		144.1
(-3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 110.3
(3)
P 		67.1
(-0.3)
P 		50.4
(-1.5)
P 		31
(-3)
A 		79
B 121.1
(3)
P 		59
(-2)
P 		48.9
(-2.8)
P 		47
(-3)
P 		74
C 128.8
(3)
P 		91.6
(0.4)
P 		82.2
(-0.3)
P 		44.5
(-3)
P 		84
avr 120.1
(3) 		72.6
(-0.6) 		60.5
(-1.5) 		40.8
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 66.3
(-1.4)
P 		132.6
(3)
P 		65.1
(-1.4)
P 		88
(0.1)
P 		73.6
(-0.9)
P 		41.4
(-3)
P 		91
B 115.8
(2.7)
P 		116.1
(2.8)
P 		74.2
(-0.6)
P 		69.4
(-1)
P 		119.1
(3)
P 		45.2
(-3)
P 		74
C 106.1
(2.8)
P 		108
(3)
P 		84.1
(0.6)
P 		57.9
(-2)
P 		83.9
(0.6)
P 		47.4
(-3)
P 		61
avr 96.1
(1.2) 		118.9
(3) 		74.5
(-0.6) 		71.8
(-0.8) 		92.2
(0.8) 		44.7
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6306
Sequence Type Exemplar sequence
Representative Public ID ZK757.2 NCBI
Target Description ZK757.2 /REP_DB=WormBase Gene ID /WP=CE00468 /TR=SW:P34680 /GB=CAA82388.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066789 NCBI Caenorhabditis elegans ZK757.2 (ZK757.2) mRNA, complete cds. 11/11 None
SNAP00000014936 ENSEMBL cdna:SNAP chromosome:CEL140:III:9874193:9877259:-1 11/11 None
GENEFINDER00000014942 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9874193:9877259:-1 11/11 None
ZK757.2 ENSEMBL cdna:known chromosome:CEL140:III:9874059:9877368:-1 gene:ZK757.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9874188-9876406(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl ZK757.2
Entrez Gene 191421 Entrez gene
SwissProt P34680 EMBL-EBI
WormBase CE34151 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82388 Hypothetical protein ZK757.2 [Caenorhabditis elegans] ref|NP_499190.2| ZK757.2 [Caenorhabditis elegans] sp|P34680|YO42_CAEEL Hypothetical protein ZK757.2 in chromosome III 1.0E-157
blast CAE65093 Hypothetical protein CBG09952 [Caenorhabditis briggsae] 1.0E-156
blast XP_415902 PREDICTED: similar to Dual specificity protein phosphatase 14 (Mitogen-activated protein kinase phosphatase 6) (MAP kinase phosphatase 6) (MKP-6) (MKP-1 like protein tyrosine phosphatase) (MKP-L) [Gallus gallus] 4.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 2.1E-48
Sequence
Target Sequence 
>C. ELEGANS:192055_AT
tatctcgagatctgccacgtttggaatcgcttatgtgatgcaatacgagaaaaaaaccct
ccacgactcgtacaaagccgttcaacttgctcgtaacatcatctgcccaaacgtcggatt
cttccaacagctcatagatcttgaacagaagctccggggaaaagtatcctgtaaaataat
tgagcctttacctggatgcaaagttcccgacgtcatttggcaagagctctatgatgaaat
gataatgagtatgagccaagatgatcggcattctttagcttcttgtaatttatctgcaag
aagcacaaccaacgatacaatgtcacttcggtctctcaatatggtcaatgatacttccag
atcccttgcttcattccacttaactcatcgaccaatcggagcttctccaactctacttgt
tccatcttcatcatcatcctcatcagttcgtggaccaattccactacaaagagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTCGAGATCTGCCACGTTTGGA 650 657 300 Antisense
TCCACGACTCGTACAAAGCCGTTCA 373 589 359 Antisense
AACTTGCTCGTAACATCATCTGCCC 333 139 383 Antisense
ATAATTGAGCCTTTACCTGGATGCA 501 25 475 Antisense
GTTCCCGACGTCATTTGGCAAGAGC 529 439 502 Antisense
GATGATCGGCATTCTTTAGCTTCTT 287 411 559 Antisense
TCACTTCGGTCTCTCAATATGGTCA 68 625 622 Antisense
CAATGATACTTCCAGATCCCTTGCT 149 183 645 Antisense
TTCATTCCACTTAACTCATCGACCA 529 689 669 Antisense
AATCGGAGCTTCTCCAACTCTACTT 206 169 693 Antisense
GGACCAATTCCACTACAAAGAGCTC 207 523 751 Antisense
Sequence Source Affymetrix Proprietary Database