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[192054_at] kazal-type proteinase inhibitor

Description F29G6.1 /REP_DB=WormBase Gene ID /WP=CE18653 /TR=Q95011 /GB=CAB01753.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=kazal-type proteinase inhibitor
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 46      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 138
(-2.7)
P 		272.2
(3)
P 		232.2
(1.3)
P 		132.1
(-3)
P 		140
B 36.9
(-3)
P 		262.9
(3)
P 		174.3
(0.6)
P 		61.3
(-2.4)
A 		226
C 89.9
(-3)
P 		282.6
(2.8)
P 		289.8
(3)
P 		140.5
(-1.5)
P 		200
avr 88.3
(-3) 		272.6
(3) 		232.1
(1.7) 		111.3
(-2.3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 158.5
(-1.6)
M 		259.7
(3)
P 		238
(2)
P 		188.2
(-0.3)
P 		142.8
(-2.4)
P 		128.9
(-3)
P 		131
B 145.7
(-3)
P 		243.3
(3)
P 		242
(2.9)
P 		176
(-1.1)
P 		173.8
(-1.3)
P 		161.9
(-2)
P 		98
C 95.9
(-3)
P 		288
(3)
P 		226.2
(1.1)
P 		215
(0.7)
P 		138.9
(-1.7)
P 		195.5
(0.1)
P 		192
avr 133.4
(-3) 		263.7
(3) 		235.4
(1.7) 		193.1
(-0.3) 		151.8
(-2.2) 		162.1
(-1.7) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 50.2
(1.5)
P 		59.1
(2.8)
P 		60.7
(3)
P 		19.3
(-3)
P 		41
B 11.8
(-3)
P 		64.9
(3)
P 		40.4
(0.2)
P 		13.1
(-2.9)
A 		53
C 29.8
(-2.5)
P 		81.2
(1.5)
P 		101
(3)
P 		23.7
(-3)
P 		77
avr 30.6
(-1.6) 		68.4
(3) 		67.4
(2.9) 		18.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 29.2
(-3)
M 		92.4
(3)
P 		51.8
(-0.9)
P 		47.7
(-1.2)
P 		43.1
(-1.7)
P 		31.4
(-2.8)
P 		63
B 50.7
(-2.3)
P 		81
(3)
P 		58.8
(-0.9)
P 		46.6
(-3)
P 		70.6
(1.2)
P 		60.4
(-0.6)
P 		34
C 35.5
(-3)
P 		87.9
(3)
P 		57.6
(-0.5)
P 		43.2
(-2.1)
P 		45
(-1.9)
P 		65.5
(0.4)
P 		52
avr 38.5
(-3) 		87.1
(3) 		56.1
(-0.8) 		45.8
(-2.1) 		52.9
(-1.2) 		52.4
(-1.3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16069
Sequence Type Exemplar sequence
Representative Public ID F29G6.1 NCBI
Target Description F29G6.1 /REP_DB=WormBase Gene ID /WP=CE18653 /TR=Q95011 /GB=CAB01753.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=kazal-type proteinase inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077519 NCBI Caenorhabditis elegans F29G6.1 (F29G6.1) mRNA, complete cds. 11/11 None
SNAP00000010618 ENSEMBL cdna:SNAP chromosome:CEL140:X:11504077:11509280:1 11/11 None
GENEFINDER00000010626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11504077:11509280:1 11/11 None
F29G6.1 ENSEMBL cdna:known chromosome:CEL140:X:11502813:11509313:1 gene:F29G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11502812-11509280(+) 100.0 100.0
Public Domain and Genome References
Gene Title kazal-type proteinase inhibitor
Ensembl F29G6.1
Entrez Gene 181339 Entrez gene
SwissProt Q95011 EMBL-EBI
WormBase CE34177 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636247_AT dm
DROSGENOME1:152249_AT dm
DROSGENOME1:151304_S_AT dm
DROSGENOME1:151303_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01753 Hypothetical protein F29G6.1 [Caenorhabditis elegans] ref|NP_509920.2| F29G6.1 [Caenorhabditis elegans] 0.0
blast CAE70628 Hypothetical protein CBG17314 [Caenorhabditis briggsae] 0.0
blast AAP92780 hepatopancreas kazal-type proteinase inhibitor [Penaeus monodon] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 5.6E-9
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 5.8E-6
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 7.9E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 1.2E-7
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.8E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 1.5E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-9
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 4.3E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 3.3E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.8E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 1.5E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-9
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 4.3E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 3.3E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 1.2E-7
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.8E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 1.5E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-5
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 2.1E-9
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 4.3E-8
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 3.3E-5
Sequence
Target Sequence 
>C. ELEGANS:192054_AT
gggacaatgctgtaaccagccatgtgatgaagataaaaccccagtttgcgacggaacaat
tacacatccgaacatttgcagattcagaattgcacaatgtgaagcagaacgagtaaacaa
aacgctcagcattgcctattcaggagagtgttgtcttctcccaaaaggagagtgtgaaag
ttctggagcagtttgtgattcagagggtcaaactcatatgaatcattgtgtttatcaaca
aagaagatgtatggcacaaaccatatctcagaagactctaaacattgttcatacaggaga
gtgttgtgcattagcttcgtgcccaaaaaccggacagccggtatgtgactcaagaggtcg
aactcatgattctctttgtcactttcataactcaaagtgtatatttgacaagattcatac
tcaaaacacaacgttaaccctggactaccaaggaaaatgctgtcccgctggatgtacaga
tgagttgtctgttatttgtgaccaacatgagaacatataccgaaactcgtgttattttaa
tctgaaagcatgtgaaacgtggcgacgaacacaagacgtgcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACAATGCTGTAACCAGCCATGT 219 493 2886 Antisense
AAACGCTCAGCATTGCCTATTCAGG 202 127 3005 Antisense
GGAGAGTGTTGTCTTCTCCCAAAAG 317 517 3028 Antisense
GGCACAAACCATATCTCAGAAGACT 612 533 3138 Antisense
AGTGTTGTGCATTAGCTTCGTGCCC 664 59 3185 Antisense
GCTTCGTGCCCAAAAACCGGACAGC 450 297 3199 Antisense
CGGACAGCCGGTATGTGACTCAAGA 331 243 3216 Antisense
GAGGTCGAACTCATGATTCTCTTTG 112 403 3239 Antisense
GATTCTCTTTGTCACTTTCATAACT 604 431 3253 Antisense
AATGCTGTCCCGCTGGATGTACAGA 296 167 3341 Antisense
GGCGACGAACACAAGACGTGCTTCT 528 539 3446 Antisense
Sequence Source Affymetrix Proprietary Database