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[192053_at] intermediate filament protein

Description H28G03.3 /REP_DB=WormBase Gene ID /WP=CE11602 /TR=Q9TXP5 /GB=AAC67402.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament protein
Cluster 6grp_total > 09      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 75.8
(1.1)
A 		104.1
(3)
A 		14.1
(-3)
A 		70
(0.7)
A 		90
B 47.7
(2.8)
A 		49.1
(3)
A 		15.5
(-3)
A 		19.5
(-2.3)
A 		34
C 39.3
(-0.8)
A 		59.4
(2.6)
A 		26.1
(-3)
A 		61.8
(3)
A 		36
avr 54.3
(1.1) 		70.9
(3) 		18.6
(-3) 		50.4
(0.6) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 69.8
(3)
A 		18.3
(-2.7)
A 		29.8
(-1.5)
A 		31.6
(-1.3)
A 		16
(-3)
A 		56.1
(1.5)
A 		54
B 42.3
(3)
A 		34.8
(1.8)
A 		7.7
(-2.6)
A 		11.4
(-2)
A 		37.8
(2.3)
A 		5.4
(-3)
A 		37
C 34.7
(-1.6)
A 		27.5
(-2)
A 		21.8
(-2.3)
A 		111.3
(3)
A 		10.5
(-3)
A 		26.9
(-2)
A 		101
avr 48.9
(2.5) 		26.9
(-1.7) 		19.8
(-3) 		51.4
(3) 		21.4
(-2.7) 		29.5
(-1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 27.6
(3)
A 		22.6
(1.7)
A 		3.7
(-3)
A 		10.2
(-1.4)
A 		24
B 15.2
(3)
A 		12.1
(1.4)
A 		3.6
(-3)
A 		4.2
(-2.7)
A 		12
C 13
(-0.1)
A 		17.1
(3)
A 		9.1
(-3)
A 		10.4
(-2)
A 		8
avr 18.6
(3) 		17.3
(2.4) 		5.5
(-3) 		8.3
(-1.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.9
(2.5)
A 		6.5
(-1.9)
A 		6.5
(-1.9)
A 		8
(-0.8)
A 		4.8
(-3)
A 		13.7
(3)
A 		9
B 14.7
(2.7)
A 		11.6
(1.3)
A 		1.9
(-3)
A 		3
(-2.5)
A 		15.4
(3)
A 		2
(-3)
A 		14
C 12.8
(-0)
A 		8.4
(-1.4)
A 		5.5
(-2.3)
A 		22.4
(3)
A 		3.4
(-3)
A 		9
(-1.2)
A 		19
avr 13.5
(3) 		8.8
(-0.2) 		4.6
(-3) 		11.1
(1.4) 		7.9
(-0.8) 		8.2
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16607
Sequence Type Exemplar sequence
Representative Public ID H28G03.3 NCBI
Target Description H28G03.3 /REP_DB=WormBase Gene ID /WP=CE11602 /TR=Q9TXP5 /GB=AAC67402.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076485 NCBI Caenorhabditis elegans H28G03.3 (H28G03.3) mRNA, complete cds. 11/11 None
H28G03.3 ENSEMBL cdna:known chromosome:CEL140:X:5220371:5222007:-1 gene:H28G03.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008044 6/11 Cross Hyb Matching Probes None
SNAP00000008033 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5220371-5222008(-) 96.17 100.0
Public Domain and Genome References
Gene Title intermediate filament protein
Ensembl H28G03.3
Entrez Gene 186792 Entrez gene
SwissProt Q9TXP5 EMBL-EBI
WormBase CE11602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67402 Hypothetical protein H28G03.3 [Caenorhabditis elegans] ref|NP_508886.1| H28G03.3 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:192053_AT
tgcaccaccaagctcagcgttttaatttaaaaattgagaatttaaaaacaatgatcccac
tccacgttcaccatctccactataccgtgaagctgatttttacagaatactctccccact
cgccgacttacaaccctgatagcccgagctatggagagccatccgtcgcggccgaacagc
agcgtccagctagttctgctcgttataatgttggcccagcaaacaactttgccgttcaaa
ccccatctccagcacaaattgctgcctggggttattccggggtatcaacggtggagtatg
aacaaatgaaaaacaagaacgagtacttgcaaagggaacacgcggaaatgcagaaaagta
ttaaaaggaaggaccgagaaatcgaaagacttcgcagcaagaatcggagactcgaagagg
agggccgcaatattcgcgaacaaatgccgagcaccaggacttgccagtcacgttccattt
atacttggatttttcaaataattatgtttttgcaacacattttccacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACCACCAAGCTCAGCGTTTTAA 260 577 17 Antisense
TAAAAACAATGATCCCACTCCACGT 89 639 59 Antisense
CACCATCTCCACTATACCGTGAAGC 272 201 85 Antisense
ATTTTTACAGAATACTCTCCCCACT 382 11 112 Antisense
GAACAGCAGCGTCCAGCTAGTTCTG 542 349 190 Antisense
GTTCTGCTCGTTATAATGTTGGCCC 387 443 209 Antisense
TGCCTGGGGTTATTCCGGGGTATCA 389 581 279 Antisense
GAGGAGGGCCGCAATATTCGCGAAC 627 403 433 Antisense
CAAATGCCGAGCACCAGGACTTGCC 173 191 457 Antisense
TTGCCAGTCACGTTCCATTTATACT 510 683 477 Antisense
GTTTTTGCAACACATTTTCCACGAA 392 447 522 Antisense
Sequence Source Affymetrix Proprietary Database