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[192051_at] protein-tyrosine phosphatase

Description Y71F9AL.4 /REP_DB=WormBase Gene ID /WP=CE25558 /TR=Q9N4H5 /GB=AAF36005.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 75.8
(-1.1)
A 		79.8
(-0.9)
A 		48.1
(-3)
A 		136.6
(3)
A 		89
B 67.7
(-0)
A 		30.5
(-3)
A 		54.4
(-1.1)
A 		105.1
(3)
A 		75
C 11.6
(-3)
A 		45
(-1.2)
A 		59.3
(-0.5)
A 		125.9
(3)
A 		114
avr 51.7
(-3) 		51.8
(-3) 		53.9
(-2.8) 		122.5
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 63.2
(0.1)
A 		46.3
(-1)
A 		16
(-3)
A 		61.8
(0)
A 		68.7
(0.5)
A 		106.8
(3)
P 		91
B 26.1
(-3)
A 		40.7
(-2.1)
A 		27.7
(-2.9)
A 		63.3
(-0.8)
A 		107.8
(1.8)
A 		127.4
(3)
P 		101
C 77.1
(1.7)
A 		46.4
(-0.2)
A 		3.6
(-3)
A 		63.1
(0.8)
A 		91.8
(2.7)
A 		96.6
(3)
P 		93
avr 55.5
(-0.5) 		44.5
(-1.2) 		15.8
(-3) 		62.7
(-0) 		89.4
(1.7) 		110.3
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 27.6
(3)
A 		17.3
(-1.1)
A 		12.6
(-3)
A 		20
(-0)
A 		15
B 21.6
(2.7)
A 		7.5
(-3)
A 		12.6
(-0.9)
A 		22.4
(3)
A 		15
C 3.8
(-3)
A 		12.9
(0.1)
A 		20.7
(2.8)
A 		21.2
(3)
A 		17
avr 17.7
(0.6) 		12.6
(-3) 		15.3
(-1.1) 		21.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.6
(-0.8)
A 		16.4
(0.4)
A 		3.5
(-3)
A 		15.7
(0.3)
A 		20.7
(1.6)
A 		26
(3)
P 		23
B 9.1
(-2.6)
A 		13.5
(-2)
A 		6.7
(-3)
A 		16.8
(-1.5)
A 		43.8
(2.5)
A 		47.5
(3)
P 		41
C 28.6
(2.3)
A 		14.2
(-0.5)
A 		0.9
(-3)
A 		12.7
(-0.7)
A 		29.7
(2.5)
A 		32.3
(3)
P 		31
avr 16.4
(-0.6) 		14.7
(-0.9) 		3.7
(-3) 		15.1
(-0.8) 		31.4
(2.3) 		35.3
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.82
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.4 NCBI
Target Description Y71F9AL.4 /REP_DB=WormBase Gene ID /WP=CE25558 /TR=Q9N4H5 /GB=AAF36005.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058670 NCBI Caenorhabditis elegans Y71F9AL.4 (Y71F9AL.4) mRNA, complete cds. 11/11 A 
SNAP00000005893 ENSEMBL cdna:SNAP chromosome:CEL140:I:2890831:2907710:1 11/11 None
GENEFINDER00000005900 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2903460:2907710:1 11/11 None
Y71F9AL.4 ENSEMBL cdna:known chromosome:CEL140:I:2903597:2907715:1 gene:Y71F9AL.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2903635-2907710(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl Y71F9AL.4
Entrez Gene 171861 Entrez gene
SwissProt Q9N4H5 EMBL-EBI
WormBase CE25558 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36005 Hypothetical protein Y71F9AL.4 [Caenorhabditis elegans] ref|NP_491071.1| Y71F9AL.4 [Caenorhabditis elegans] 0.0
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 1.0E-83
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 8.0E-66
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 1.0E-65
blast AAA82314 Hypothetical protein F20B6.6 [Caenorhabditis elegans] ref|NP_508715.1| F20B6.6 [Caenorhabditis elegans] 8.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 8.4E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 8.8E-17
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Sequence
Target Sequence 
>C. ELEGANS:192051_AT
gcaagaagtgttcagactttcccgcaatacgtgtatgctctccgctgcgttctggagttt
ctctactcaaaaggactttataaaagaaacgagcaagagtggacgaaattcaaggaaacg
tacgcgaaaatcaaggcgaagaagctcaagatcaaggataaatcgagaggaaagaagaca
ctgtctcaggagatttcagacaccaatttggtaattgatccagctggcaagaagagtgga
tccaatcagctgtcacctggaatcctggaagttcaaccatcattatctcgtaatccatcg
cctgatccagttccatctccgttgacacctcccgtgccaccttctccaatgactccacca
gatgcatcgacgaagccaactgacgcgagttccagctctgccctgaaatctgcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGAAGTGTTCAGACTTTCCCGC 106 321 1240 Antisense
GACTTTCCCGCAATACGTGTATGCT 148 373 1254 Antisense
CTGCGTTCTGGAGTTTCTCTACTCA 492 237 1284 Antisense
GAAGACACTGTCTCAGGAGATTTCA 669 339 1413 Antisense
GGAGATTTCAGACACCAATTTGGTA 333 517 1428 Antisense
GAGTGGATCCAATCAGCTGTCACCT 677 401 1473 Antisense
AGCTGTCACCTGGAATCCTGGAAGT 437 81 1487 Antisense
GAAGTTCAACCATCATTATCTCGTA 60 337 1507 Antisense
ATCATTATCTCGTAATCCATCGCCT 278 31 1518 Antisense
CTCCACCAGATGCATCGACGAAGCC 87 237 1592 Antisense
CAGCTCTGCCCTGAAATCTGCAATT 110 205 1632 Antisense
Sequence Source Affymetrix Proprietary Database