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[192050_at] Sugar (and other) transporters

Description Y37A1A.3 /REP_DB=WormBase Gene ID /WP=CE16614 /TR=O45920 /GB=CAB16470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 20      4grp_highest_8_8 > 38      4grp_high_8_8 > 02      6grp_highest_nonorm > 80      6grp_total > 32      4grp_total > 14      6grp_highest_sub > 01_02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 228.7
(3)
P 		150.8
(-3)
P 		153.6
(-2.8)
P 		183.6
(-0.5)
P 		78
B 207.1
(1.6)
P 		138
(-3)
P 		159.3
(-1.6)
P 		228.6
(3)
P 		91
C 199.4
(-1.7)
P 		184.6
(-2.2)
P 		164.1
(-3)
P 		327.4
(3)
P 		163
avr 211.7
(0.6) 		157.8
(-3) 		159
(-2.9) 		246.5
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 256.6
(1.3)
P 		237.6
(0.4)
P 		290.8
(3)
P 		244
(0.7)
P 		169.8
(-3)
P 		193.9
(-1.8)
P 		121
B 297.1
(2.2)
P 		273.3
(1.3)
P 		318.6
(3)
P 		260.1
(0.7)
P 		203.2
(-1.5)
P 		163.1
(-3)
P 		156
C 243.6
(0.8)
P 		296.9
(3)
P 		264.9
(1.7)
P 		235.9
(0.4)
P 		154.5
(-3)
P 		176
(-2.1)
P 		142
avr 265.8
(1.7) 		269.3
(1.9) 		291.4
(3) 		246.7
(0.7) 		175.8
(-3) 		177.7
(-2.9) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 83.3
(3)
P 		32.7
(-2.4)
P 		40.2
(-1.6)
P 		26.9
(-3)
P 		56
B 66
(3)
P 		34.1
(-3)
P 		36.9
(-2.5)
P 		48.7
(-0.3)
P 		32
C 66
(3)
P 		53.1
(-3)
P 		57.2
(-1.1)
P 		55.2
(-2)
P 		13
avr 71.8
(3) 		40
(-3) 		44.8
(-2.1) 		43.6
(-2.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 47.3
(-3)
P 		84.5
(3)
P 		63.3
(-0.4)
P 		61.9
(-0.6)
P 		51.2
(-2.4)
P 		47.2
(-3)
P 		37
B 103.4
(3)
P 		91
(1.3)
P 		77.4
(-0.7)
P 		68.9
(-1.9)
P 		82.6
(0.1)
P 		60.8
(-3)
P 		43
C 90.3
(3)
P 		90.6
(3)
P 		67.4
(-0.2)
P 		47.4
(-3)
P 		50
(-2.6)
P 		58.9
(-1.4)
P 		43
avr 80.3
(1.5) 		88.7
(3) 		69.4
(-0.5) 		59.4
(-2.3) 		61.3
(-2) 		55.6
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9558
Sequence Type Exemplar sequence
Representative Public ID Y37A1A.3 NCBI
Target Description Y37A1A.3 /REP_DB=WormBase Gene ID /WP=CE16614 /TR=O45920 /GB=CAB16470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070274 NCBI Caenorhabditis elegans Y37A1A.3 (Y37A1A.3) mRNA, complete cds. 11/11 None
SNAP00000035962 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13897958:13901162:-1 11/11 None
GENEFINDER00000035969 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13897097:13902816:-1 11/11 None
Y37A1A.3 ENSEMBL cdna:known chromosome:CEL140:IV:13897822:13902738:-1 gene:Y37A1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13897963-13902744(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl Y37A1A.3
Entrez Gene 189599 Entrez gene
SwissProt O45920 EMBL-EBI
WormBase CE16652 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16470 Hypothetical protein Y37A1A.3 [Caenorhabditis elegans] ref|NP_502675.2| Y37A1A.3 [Caenorhabditis elegans] 0.0
blast CAE74653 Hypothetical protein CBG22452 [Caenorhabditis briggsae] 0.0
blast CAE74653 Hypothetical protein CBG22452 [Caenorhabditis briggsae] 1.0E-155
blast CAE64246 Hypothetical protein CBG08888 [Caenorhabditis briggsae] 1.0E-98
blast CAE64246 Hypothetical protein CBG08888 [Caenorhabditis briggsae] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 9.1E-44
Pfam IPR005828 EMBL-EBI General substrate transporter 6.1E-26
Pfam IPR005828 EMBL-EBI General substrate transporter 9.1E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502675.2 12 5-27,52-70,82-104,109-131,144-163,173-195,266-288,303-320,333-355,365-387,400-422,432-454
Y37A1A.3 12 5-27,52-70,82-104,109-131,144-163,173-195,266-288,303-320,333-355,365-387,400-422,432-454
SNAP00000035962 8 31-53,58-80,153-175,188-205,218-240,247-269,289-309,316-338
GENEFINDER00000035969 13 24-46,78-96,108-130,135-157,170-189,199-221,292-314,329-346,359-381,391-413,426-448,458-480,505-527
Sequence
Target Sequence 
>C. ELEGANS:192050_AT
ggtaaccttctcaatggcaatgtcaggaattactgtgatcaatgcatttgcttttgaaat
tttgatgaatgttggaatgaaacaagatacggctgcaattgcaaatgctgctatatgctt
cttctcattcgctggaattttggtttcaactaaaattatcgatcatttcgggagaagacc
attattgatatcaacattcggatgtttggcagttgttaatgtagtgattgttggattgat
gtatacttttgctgaaactcagaaccaaatcgtgtcatacttcttgatatctgcaatatg
tatgttcaatttcctcttcgcaatgggtccaggaccactttcaatgtttataactggaga
attggttcctcaaaactgtcgatcggcttcttctgtctggacaaatgcagttatggctgt
tgtccgattcctgattctaacattctatcttcctgtcaaaaatatgacgtctgagtttat
ggcctacgcgattttcttcgttgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAACCTTCTCAATGGCAATGTCA 603 503 876 Antisense
AATGCTGCTATATGCTTCTTCTCAT 292 167 979 Antisense
TATGTATGTTCAATTTCCTCTTCGC 241 101 1172 Antisense
TCCTCTTCGCAATGGGTCCAGGACC 200 589 1187 Antisense
GGTCCAGGACCACTTTCAATGTTTA 476 501 1201 Antisense
CAAAACTGTCGATCGGCTTCTTCTG 289 191 1246 Antisense
CAGTTATGGCTGTTGTCCGATTCCT 685 205 1283 Antisense
GTCCGATTCCTGATTCTAACATTCT 106 477 1297 Antisense
CTAACATTCTATCTTCCTGTCAAAA 465 227 1312 Antisense
GACGTCTGAGTTTATGGCCTACGCG 533 375 1341 Antisense
GCCTACGCGATTTTCTTCGTTGTTC 169 271 1357 Antisense
Sequence Source Affymetrix Proprietary Database