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[192046_at] zinc finger-containing protein

Description F44C4.2 /REP_DB=WormBase Gene ID /WP=CE07250 /TR=Q20389 /GB=AAA92328.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger-containing protein
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 0      6grp_total > 34      4grp_total > 23      6grp_cgc > 44      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 81
(2.2)
P 		49.1
(-3)
P 		85.9
(3)
P 		63.5
(-0.7)
P 		37
B 89.5
(3)
P 		56.1
(-0.5)
P 		31.5
(-3)
A 		80.4
(2.1)
P 		58
C 86.4
(0.5)
P 		70.5
(-1.9)
P 		63.6
(-3)
P 		103
(3)
P 		39
avr 85.6
(3) 		58.6
(-3) 		60.3
(-2.6) 		82.3
(2.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 60.9
(0.4)
A 		49.5
(-0.6)
P 		89.5
(3)
P 		22.6
(-3)
A 		44.1
(-1.1)
A 		54.5
(-0.1)
P 		67
B 92.2
(1.7)
P 		91.8
(1.7)
P 		108.4
(3)
P 		41.3
(-2.4)
P 		47.5
(-1.9)
P 		33.6
(-3)
P 		75
C 69.6
(0.4)
P 		85.6
(3)
P 		48.9
(-3)
A 		55.4
(-1.9)
P 		59.8
(-1.2)
P 		59.2
(-1.3)
P 		37
avr 74.2
(1.9) 		75.6
(2.1) 		82.3
(3) 		39.8
(-3) 		50.5
(-1.5) 		49.1
(-1.7) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 29.5
(3)
P 		10.7
(-2.6)
P 		22.4
(0.9)
P 		9.3
(-3)
P 		20
B 28.5
(3)
P 		13.9
(-1.1)
P 		7.3
(-3)
A 		17.1
(-0.2)
P 		21
C 28.6
(3)
P 		20.3
(-1.4)
P 		22.2
(-0.4)
P 		17.4
(-3)
P 		11
avr 28.9
(3) 		15
(-2.8) 		17.3
(-1.9) 		14.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.2
(-0.6)
A 		17.6
(2.2)
P 		19.5
(3)
P 		5.7
(-3)
A 		13.3
(0.3)
A 		13.3
(0.3)
P 		14
B 32.1
(3)
P 		30.6
(2.6)
P 		26.3
(1.4)
P 		10.9
(-3)
P 		19.3
(-0.6)
P 		12.5
(-2.5)
P 		21
C 25.8
(2.9)
P 		26.1
(3)
P 		12.5
(-2.4)
A 		11.1
(-3)
P 		19.4
(0.3)
P 		19.8
(0.5)
P 		15
avr 23
(2.3) 		24.8
(3) 		19.4
(0.9) 		9.2
(-3) 		17.3
(0.1) 		15.2
(-0.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11464
Sequence Type Exemplar sequence
Representative Public ID F44C4.2 NCBI
Target Description F44C4.2 /REP_DB=WormBase Gene ID /WP=CE07250 /TR=Q20389 /GB=AAA92328.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger-containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072282 NCBI Caenorhabditis elegans F44C4.2 (F44C4.2) mRNA, complete cds. 11/11 None
SNAP00000007886 ENSEMBL cdna:SNAP chromosome:CEL140:V:6624862:6627251:1 11/11 None
GENEFINDER00000007890 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6624862:6627251:1 11/11 None
F44C4.2 ENSEMBL cdna:known chromosome:CEL140:V:6624862:6627288:1 gene:F44C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6624861-6627251(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger-containing protein
Gene Symbol nhr-37
Ensembl F44C4.2
Entrez Gene 185727 Entrez gene
SwissProt Q20389 EMBL-EBI
WormBase CE07250 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA92328 Hypothetical protein F44C4.2 [Caenorhabditis elegans] ref|NP_504683.1| F44C4.2 [Caenorhabditis elegans] 0.0
blast CAE71917 Hypothetical protein CBG18980 [Caenorhabditis briggsae] 0.0
blast CAE56024 Hypothetical protein CBG23583 [Caenorhabditis briggsae] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.7E-21
Sequence
Target Sequence 
>C. ELEGANS:192046_AT
atatgtactcttgttggttttcctcttcaaaatctttaatgtctctacccatggatcaaa
aaatgcagctcttccgatcttcttggaatgtcgttagaacatttgagcgcctagaaatgt
ctgtcaagatttttgaagaaggagtcattcgaggaggatatatacttatcaatgatgatc
tcgcaatgaaattggaatcaactcatattgactttgcctcgataactgatctcacgaatc
aatatttcaacaaactattcgaacccttcctacaccgttacatagatgaagttgcaaggc
cacttcttgatctcaagccaactacggaagaagtcgttttttgtatggttcaccttattg
gacttgaagaaggtgatctttctcatgaaacacgagaagcttgcgaacaaatgcgagcag
aaattgctgaccaaatgcacgtttattatacaaatcggacggatatcaaaatgtattctc
atcggcttctgattcttatgaaactggtcaaatccatgaagagaatctctcgtgagaaat
caaagatcaaggagctcttctggctttttgacatctttcatgccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTACTCTTGTTGGTTTTCCTC 126 21 647 Antisense
ATCTTTAATGTCTCTACCCATGGAT 513 29 678 Antisense
AAAAAATGCAGCTCTTCCGATCTTC 71 131 704 Antisense
AACTCATATTGACTTTGCCTCGATA 622 139 846 Antisense
GCCTCGATAACTGATCTCACGAATC 549 281 862 Antisense
CCCTTCCTACACCGTTACATAGATG 617 259 910 Antisense
GCAAGGCCACTTCTTGATCTCAAGC 600 321 940 Antisense
GTATGGTTCACCTTATTGGACTTGA 76 455 989 Antisense
TATTCTCATCGGCTTCTGATTCTTA 650 663 1120 Antisense
CAAGGAGCTCTTCTGGCTTTTTGAC 561 183 1194 Antisense
CTTTTTGACATCTTTCATGCCGAAA 654 221 1210 Antisense
Sequence Source Affymetrix Proprietary Database