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[192042_s_at] Yeast YAE2 hypothetical protein

Description K09E9.2 /REP_DB=WormBase Gene ID /WP=CE12012 /TR=Q93878 /GB=CAB01889.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast YAE2 hypothetical protein
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 61      6grp_total > 50      4grp_total > 57      6grp_highest_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 338.9
(-1.7)
P 		443.5
(0.2)
P 		602.2
(3)
P 		265.1
(-3)
P 		337
B 324.8
(-2.2)
P 		511.4
(2.3)
P 		540
(3)
P 		292.1
(-3)
P 		248
C 287.2
(-2.4)
P 		561.5
(1.9)
P 		631.7
(3)
P 		247.1
(-3)
P 		385
avr 317
(-2.1) 		505.5
(1.4) 		591.3
(3) 		268.1
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 378.8
(0)
P 		438.4
(1.5)
P 		463.3
(2)
P 		503.1
(3)
P 		343.6
(-0.8)
P 		252.6
(-3)
P 		251
B 524.6
(2.9)
P 		379.2
(-0.4)
P 		500.8
(2.4)
P 		529.7
(3)
P 		408.8
(0.3)
P 		260.5
(-3)
P 		269
C 587.4
(3)
P 		441.2
(0.7)
P 		520
(1.9)
P 		587.1
(3)
P 		335
(-1)
P 		213.4
(-3)
P 		374
avr 496.9
(2.1) 		419.6
(0.6) 		494.7
(2.1) 		540
(3) 		362.5
(-0.6) 		242.2
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 123.4
(1.3)
P 		96.3
(-0.1)
P 		157.4
(3)
P 		38.8
(-3)
P 		119
B 103.6
(0.9)
P 		126.3
(3)
P 		125.1
(2.9)
P 		62.2
(-3)
P 		64
C 95.1
(-1.2)
P 		161.4
(1)
P 		220.2
(3)
P 		41.7
(-3)
P 		179
avr 107.4
(-0) 		128
(1) 		167.6
(3) 		47.6
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 69.8
(-2.5)
P 		155.9
(3)
P 		100.9
(-0.5)
P 		127.6
(1.2)
P 		103.7
(-0.3)
P 		61.5
(-3)
P 		94
B 182.5
(3)
P 		126.2
(-1)
P 		121.6
(-1.3)
P 		140.3
(0)
P 		166.1
(1.8)
P 		97.1
(-3)
P 		85
C 217.7
(3)
P 		134.6
(-0.4)
P 		132.3
(-0.5)
P 		118.1
(-1.1)
P 		108.4
(-1.5)
P 		71.4
(-3)
P 		146
avr 156.7
(3) 		138.9
(1.7) 		118.3
(0.1) 		128.7
(0.9) 		126.1
(0.7) 		76.7
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192042_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17580
Sequence Type Exemplar sequence
Representative Public ID K09E9.2 NCBI
Target Description K09E9.2 /REP_DB=WormBase Gene ID /WP=CE12012 /TR=Q93878 /GB=CAB01889.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Yeast YAE2 hypothetical protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078174 NCBI Caenorhabditis elegans K09E9.2 (K09E9.2) mRNA, complete cds. 11/11 None
SNAP00000003230 ENSEMBL cdna:SNAP chromosome:CEL140:X:15614337:15616432:-1 11/11 None
GENEFINDER00000003235 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15614337:15616432:-1 11/11 None
K09E9.2.1 ENSEMBL cdna:known chromosome:CEL140:X:15613723:15616437:-1 gene:K09E9.2 11/11 None
K09E9.2.2 ENSEMBL cdna:known chromosome:CEL140:X:15613723:15616439:-1 gene:K09E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15614336-15616432(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YAE2 hypothetical protein
Ensembl K09E9.2
Entrez Gene 181652 Entrez gene
SwissProt Q93878 EMBL-EBI
WormBase CE12012 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263193_AT expressed protein at
CANINE:1585563_AT similar to Serologically defined breast cancer antigen NY-BR-84 cfa
CANINE_2:CFA.12057.1.S1_AT similar to Serologically defined breast cancer antigen NY-BR-84 cfa
CANINE_2:CFAAFFX.12926.1.S1_S_AT similar to Serologically defined breast cancer antigen NY-BR-84 cfa
CANINE_2:CFAAFFX.12936.1.S1_S_AT similar to Serologically defined breast cancer antigen NY-BR-84 cfa
CANINE_2:CFAAFFX.12940.1.S1_AT similar to Serologically defined breast cancer antigen NY-BR-84 cfa
DROSOPHILA_2:1636544_AT dm
DROSGENOME1:152984_AT dm
CHICKEN:GGA.5771.1.S1_AT serologically defined breast cancer antigen 84 gga
HG-U95AV2:40514_AT chromosome 20 open reading frame 47 hs
HG-U133_PLUS_2:215257_AT chromosome 20 open reading frame 47 hs
HG-U133A_2:215257_AT chromosome 20 open reading frame 47 hs
HG-U133A:215257_AT chromosome 20 open reading frame 47 hs
HU35KSUBA:AA094752_AT chromosome 20 open reading frame 47 hs
HG-U133_PLUS_2:216032_S_AT chromosome 20 open reading frame 47 hs
HG-U133A_2:216032_S_AT chromosome 20 open reading frame 47 hs
HG-FOCUS:216032_S_AT chromosome 20 open reading frame 47 hs
HG-U133A:216032_S_AT chromosome 20 open reading frame 47 hs
U133_X3P:HS2.435671.1.S1_3P_AT chromosome 20 open reading frame 47 hs
U133_X3P:HS.169992.1.S1_3P_S_AT chromosome 20 open reading frame 47 hs
U133_X3P:HS.157309.0.S1_3P_AT chromosome 20 open reading frame 47 hs
HG-U133_PLUS_2:1558020_AT chromosome 20 open reading frame 47 hs
HG-U95C:57923_R_AT Chromosome 20 open reading frame 47 hs
HU35KSUBB:RC_AA001716_AT Chromosome 20 open reading frame 47 hs
MOUSE430_2:1456745_X_AT serologically defined breast cancer antigen 84 mm
MOE430A:1456745_X_AT serologically defined breast cancer antigen 84 mm
MOUSE430A_2:1456745_X_AT serologically defined breast cancer antigen 84 mm
MG-U74AV2:96345_AT serologically defined breast cancer antigen 84 mm
MOE430A:1423548_S_AT serologically defined breast cancer antigen 84 mm
MOUSE430A_2:1423548_S_AT serologically defined breast cancer antigen 84 mm
MOUSE430_2:1423548_S_AT serologically defined breast cancer antigen 84 mm
MOE430A:1451017_AT serologically defined breast cancer antigen 84 mm
MOUSE430A_2:1451017_AT serologically defined breast cancer antigen 84 mm
MOUSE430_2:1451017_AT serologically defined breast cancer antigen 84 mm
MOE430B:1456867_X_AT serologically defined breast cancer antigen 84 mm
MOUSE430_2:1456867_X_AT serologically defined breast cancer antigen 84 mm
MG-U74BV2:115903_AT Serologically defined breast cancer antigen 84 (Sdbcag84), mRNA mm
MU19KSUBC:TC39138_S_AT Serologically defined breast cancer antigen 84 (Sdbcag84), mRNA mm
MU19KSUBC:TC41916_AT Serologically defined breast cancer antigen 84 (Sdbcag84), mRNA mm
RG-U34C:RC_AI228649_AT serologically defined breast cancer antigen 84 (predicted) rn
RAE230A:1372233_AT serologically defined breast cancer antigen 84 (predicted) rn
RAT230_2:1372233_AT serologically defined breast cancer antigen 84 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01889 Hypothetical protein K09E9.2 [Caenorhabditis elegans] ref|NP_510575.1| K09E9.2 [Caenorhabditis elegans] 0.0
blast CAE63336 Hypothetical protein CBG07736 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510575.1 2 25-44,337-359
K09E9.2.1 2 25-44,337-359
K09E9.2.2 2 25-44,337-359
SNAP00000003230 2 25-44,337-359
GENEFINDER00000003235 2 25-44,337-359
Sequence
Target Sequence 
>C. ELEGANS:192042_S_AT
gcaggaaactttcatcttgctccaggagacccacatcaagcaatgagatcccatgtccac
gaccttcacaatctggacccagtgaaatttgacgcctcccacacagttaaccacgtgtcg
ttcggaaagtcgttccccggaaagaactatccactagatggaaaagtgaatacggacaat
cgaggaggaattatgtaccagtactacgtgaaagtagttcctacaagatatgactacttg
gatggacgtgtcgatcagagccatcagttttcggtgacaactcacaagaaggatttggga
ttccgccaatccggacttcctggtttctttttgcagtacgaatttagtccgttgatggtg
caatatgaagaattcagacaatccttcgcctcatttctagtctcactgtgtgccatcgtc
ggaggtgtcttcgcaatggctcaacttgtcgatatcacaatttatcattcatctcgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGAAACTTTCATCTTGCTCCAG 695 309 640 Antisense
TGCTCCAGGAGACCCACATCAAGCA 198 581 657 Antisense
TCCACGACCTTCACAATCTGGACCC 515 587 695 Antisense
TGGACCCAGTGAAATTTGACGCCTC 207 547 713 Antisense
CCTCCCACACAGTTAACCACGTGTC 333 267 734 Antisense
TGGACGTGTCGATCAGAGCCATCAG 520 547 882 Antisense
AGAGCCATCAGTTTTCGGTGACAAC 207 69 896 Antisense
GACTTCCTGGTTTCTTTTTGCAGTA 251 371 953 Antisense
TCATTTCTAGTCTCACTGTGTGCCA 475 619 1030 Antisense
TGTCTTCGCAATGGCTCAACTTGTC 306 559 1065 Antisense
TCACAATTTATCATTCATCTCGTTA 283 629 1094 Antisense
Sequence Source Affymetrix Proprietary Database