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[192039_s_at] phosphoacetylglucosamine mutase

Description F21D5.1 /REP_DB=WormBase Gene ID /WP=CE03244 /TR=Q19680 /GB=CAA91032.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=phosphoacetylglucosamine mutase
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_high_8_8 > 07      6grp_highest_nonorm > 92      6grp_total > 97      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 158.6
(-3)
P 		208.7
(-1.6)
A 		231.6
(-1)
P 		373.5
(3)
P 		215
B 229.4
(-1.6)
P 		188.5
(-3)
P 		258.5
(-0.5)
P 		358.8
(3)
P 		170
C 212.4
(-1.8)
P 		173.2
(-3)
A 		172.5
(-3)
P 		369.4
(3)
P 		197
avr 200.1
(-2.7) 		190.1
(-3) 		220.9
(-2) 		367.2
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 181.3
(-2.6)
P 		188.1
(-2.5)
P 		152.5
(-3)
P 		175.6
(-2.7)
P 		348.7
(-0.4)
P 		608.4
(3)
P 		456
B 139.3
(-3)
P 		213.7
(-2.1)
P 		177.9
(-2.5)
P 		320.3
(-0.7)
P 		505
(1.6)
P 		614.5
(3)
P 		475
C 126.9
(-2.7)
P 		93.1
(-3)
P 		197.3
(-1.9)
P 		231.5
(-1.6)
P 		518.5
(1.4)
P 		678.5
(3)
P 		585
avr 149.2
(-3) 		165
(-2.8) 		175.9
(-2.7) 		242.5
(-1.8) 		457.4
(0.8) 		633.8
(3) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 57.7
(1.9)
P 		45.3
(-3)
A 		60.5
(3)
P 		54.7
(0.7)
P 		15
B 73.1
(2.3)
P 		46.6
(-3)
P 		59.9
(-0.3)
P 		76.5
(3)
P 		30
C 70.3
(3)
P 		49.8
(-3)
A 		60.1
(0)
P 		62.3
(0.7)
P 		21
avr 67
(3) 		47.2
(-3) 		60.2
(0.9) 		64.5
(2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 33.4
(-3)
P 		66.9
(-1.2)
P 		33.2
(-3)
P 		44.5
(-2.4)
P 		105.2
(0.8)
P 		148.1
(3)
P 		115
B 48.5
(-2.8)
P 		71.1
(-2.1)
P 		43.2
(-3)
P 		84.8
(-1.7)
P 		205.2
(2.2)
P 		229.2
(3)
P 		186
C 47
(-2.4)
P 		28.4
(-3)
P 		50.2
(-2.3)
P 		46.5
(-2.5)
P 		167.8
(1.2)
P 		227.1
(3)
P 		199
avr 43
(-3) 		55.5
(-2.5) 		42.2
(-3) 		58.6
(-2.4) 		159.4
(1.4) 		201.5
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192039_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9227
Sequence Type Exemplar sequence
Representative Public ID F21D5.1 NCBI
Target Description F21D5.1 /REP_DB=WormBase Gene ID /WP=CE03244 /TR=Q19680 /GB=CAA91032.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=phosphoacetylglucosamine mutase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069099 NCBI Caenorhabditis elegans F21D5.1 (F21D5.1) mRNA, complete cds. 11/11 None
SNAP00000028036 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8725706:8727688:1 11/11 None
GENEFINDER00000028053 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8725706:8727688:1 11/11 None
F21D5.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8725703:8728027:1 gene:F21D5.1 11/11 None
F21D5.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8725704:8728027:1 gene:F21D5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8725711-8727694(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphoacetylglucosamine mutase
Ensembl F21D5.1
Entrez Gene 177678 Entrez gene
SwissProt Q19680 EMBL-EBI
WormBase CE03244 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17013_AT phosphoglucosamine mutase-related at
ATH1-121501:250015_AT phosphoglucosamine mutase-related at
CANINE_2:CFA.20228.1.S1_AT similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) cfa
CANINE_2:CFA.20228.1.S1_S_AT similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) cfa
CANINE_2:CFA.20949.1.S1_S_AT similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) cfa
CANINE_2:CFAAFFX.5325.1.S1_AT similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) cfa
DROSGENOME1:142532_AT dm
DROSOPHILA_2:1638994_AT dm
CHICKEN:GGA.5642.1.S1_AT similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) gga
HG-U95AV2:32739_AT phosphoglucomutase 3 hs
HG-U133_PLUS_2:210041_S_AT phosphoglucomutase 3 hs
HG-U133A:210041_S_AT phosphoglucomutase 3 hs
HG-U133A_2:210041_S_AT phosphoglucomutase 3 hs
HU35KSUBA:AA017469_AT phosphoglucomutase 3 hs
HU35KSUBA:AA035158_AT phosphoglucomutase 3 hs
HU35KSUBA:RC_AA035159_AT phosphoglucomutase 3 hs
HU35KSUBB:RC_AA001870_AT phosphoglucomutase 3 hs
HU35KSUBB:RC_AA136525_AT phosphoglucomutase 3 hs
U133_X3P:G12654830_3P_X_AT phosphoglucomutase 3 hs
U133_X3P:G12654830_3P_S_AT phosphoglucomutase 3 hs
U133_X3P:210041_3P_S_AT phosphoglucomutase 3 hs
HG-U95AV2:39267_AT phosphoglucomutase 3 hs
HG-U95E:81079_AT phosphoglucomutase 3 hs
HU35KSUBD:RC_AA282074_AT Phosphoglucomutase 3 hs
U133_X3P:HS.237323.2.S2_3P_AT Phosphoglucomutase 3 hs
HG-U133A:221788_AT Phosphoglucomutase 3 hs
HG-U133A_2:221788_AT Phosphoglucomutase 3 hs
HG-U133_PLUS_2:221788_AT Phosphoglucomutase 3 hs
HG-U95C:61760_AT Phosphoglucomutase 3 hs
MG-U74BV2:106046_AT phosphoglucomutase 3 mm
MOE430B:1428228_AT phosphoglucomutase 3 mm
MOUSE430_2:1428228_AT phosphoglucomutase 3 mm
MU19KSUBA:TC17388_AT Phosphoglucomutase 3 (Pgm3), mRNA mm
RG-U34C:AA848628_AT phosphoglucomutase 3 (predicted) rn
RAE230B:1382103_AT phosphoglucomutase 3 (predicted) rn
RAT230_2:1382103_AT phosphoglucomutase 3 (predicted) rn
RAE230A:1382762_AT Phosphoglucomutase 3 (predicted) rn
RAT230_2:1382762_AT Phosphoglucomutase 3 (predicted) rn
RG-U34A:RC_AA892272_AT Phosphoglucomutase 3 (predicted) rn
YEAST_2:1772384_AT Essential N-acetylglucosamine-phosphate mutase, a hexosephosphate mutase involved in the biosynthesis of chitin Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16868 intramolecular transferase activity, phosphotransferases inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91032 Hypothetical protein F21D5.1 [Caenorhabditis elegans] ref|NP_501500.1| F21D5.1 [Caenorhabditis elegans] 0.0
blast CAE70030 Hypothetical protein CBG16451 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005843 EMBL-EBI Phosphoglucomutase/phosphomannomutase C terminal 1.1E-4
Pfam IPR005844 EMBL-EBI Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1.1E-7
Pfam IPR005844 EMBL-EBI Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 5.4E-6
Sequence
Target Sequence 
>C. ELEGANS:192039_S_AT
acctactggagtcaagcatctgcatgaagctgcttctgagttcgacattggaatttattt
cgaggccaacggacacggaactgttgttttcagcgagattttcgaccgcatcatcagaag
aactccaactgaatcattacctctccgtcgtctagcacttttctcccgtgtcatcaatga
aactgttggggatgcttttgcagatttgcttgccgtggaagctgttctccgtcactatgg
atggtctatggatgactgggccgaaaaactgtatcgagatgttccgaatgtgcagatcaa
agttccagttattgatcgttccattttcaaaacgacgaacgccgagcaaactcttgtgaa
acctgttggaattcaaaaaatgattgatacggatgttgcaaagtacaataattcgagagc
tttcatcagaccatctggcaccgagaacattgttcgcgtatacgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTACTGGAGTCAAGCATCTGCAT 545 85 1119 Antisense
AAGCTGCTTCTGAGTTCGACATTGG 37 151 1145 Antisense
TCGAGGCCAACGGACACGGAACTGT 225 599 1178 Antisense
TCAGCGAGATTTTCGACCGCATCAT 506 625 1208 Antisense
TCCAACTGAATCATTACCTCTCCGT 333 587 1242 Antisense
CTTTTCTCCCGTGTCATCAATGAAA 315 223 1276 Antisense
GGATGCTTTTGCAGATTTGCTTGCC 115 513 1308 Antisense
TTTGCTTGCCGTGGAAGCTGTTCTC 477 667 1323 Antisense
CTGTTCTCCGTCACTATGGATGGTC 3 239 1340 Antisense
AAGTTCCAGTTATTGATCGTTCCAT 530 155 1418 Antisense
GAGAACATTGTTCGCGTATACGCTG 260 393 1561 Antisense
Sequence Source Affymetrix Proprietary Database