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[192038_at] Acetyltransferase (GNAT) family

Description C06H2.3 /REP_DB=WormBase Gene ID /WP=CE05235 /TR=Q17765 /GB=CAA99769.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Acetyltransferase (GNAT) family
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 78      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 136.8
(3)
P 		79.3
(-3)
A 		90.5
(-1.8)
P 		117.1
(0.9)
M 		58
B 127.3
(3)
P 		79.4
(-3)
P 		93.1
(-1.3)
P 		85.3
(-2.3)
P 		48
C 146.6
(3)
P 		80.7
(-3)
A 		83.5
(-2.7)
P 		114.5
(0.1)
P 		66
avr 136.9
(3) 		79.8
(-3) 		89
(-2) 		105.6
(-0.3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 136
(0.8)
P 		112.4
(-1.8)
P 		140.9
(1.3)
P 		101.3
(-3)
P 		156.2
(3)
P 		131.2
(0.3)
P 		55
B 108.1
(-0.6)
P 		103.5
(-1)
P 		128.7
(1.5)
P 		93.9
(-2)
P 		84.1
(-3)
P 		143.4
(3)
P 		59
C 95
(-3)
P 		104.6
(-1.8)
P 		96.4
(-2.8)
P 		108
(-1.3)
P 		115.8
(-0.4)
P 		142.1
(3)
P 		47
avr 113
(-1.1) 		106.8
(-2.1) 		122
(0.3) 		101.1
(-3) 		118.7
(-0.2) 		138.9
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 49.8
(3)
P 		17.2
(-3)
A 		23.6
(-1.8)
P 		17.1
(-3)
M 		33
B 40.6
(3)
P 		19.6
(-2.6)
P 		21.6
(-2.1)
P 		18.2
(-3)
P 		22
C 48.5
(3)
P 		23.2
(-2.2)
A 		29.1
(-1)
P 		19.3
(-3)
P 		29
avr 46.3
(3) 		20
(-2.6) 		24.8
(-1.6) 		18.2
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 25.1
(-3)
P 		40
(1.1)
P 		30.7
(-1.5)
P 		25.7
(-2.8)
P 		47.1
(3)
P 		31.9
(-1.1)
P 		22
B 37.6
(-0.3)
P 		34.5
(-1)
P 		31.2
(-1.7)
P 		24.9
(-3)
P 		34.2
(-1)
P 		53.5
(3)
P 		29
C 35.2
(0.1)
P 		31.9
(-0.6)
P 		24.5
(-2.4)
P 		21.7
(-3)
P 		37.5
(0.7)
P 		47.6
(3)
P 		26
avr 32.6
(-0.5) 		35.5
(0.4) 		28.8
(-1.6) 		24.1
(-3) 		39.6
(1.6) 		44.3
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12892
Sequence Type Exemplar sequence
Representative Public ID C06H2.3 NCBI
Target Description C06H2.3 /REP_DB=WormBase Gene ID /WP=CE05235 /TR=Q17765 /GB=CAA99769.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Acetyltransferase (GNAT) family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073430 NCBI Caenorhabditis elegans C06H2.3 (C06H2.3) mRNA, complete cds. 11/11 A 
SNAP00000033418 ENSEMBL cdna:SNAP chromosome:CEL140:V:11130085:11132621:1 11/11 None
GENEFINDER00000033428 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11130085:11132621:1 11/11 None
C06H2.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11130083:11132621:1 gene:C06H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11130084-11132621(+) 100.0 100.0
Public Domain and Genome References
Gene Title Acetyltransferase (GNAT) family
Ensembl C06H2.3
Entrez Gene 179543 Entrez gene
SwissProt Q17765 EMBL-EBI
WormBase CE05235 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257985_AT transcription factor jumonji (jmjC) domain-containing protein at
CANINE_2:CFAAFFX.26721.1.S1_AT similar to CG13902-PA cfa
CANINE_2:CFAAFFX.26722.1.S1_S_AT similar to CG13902-PA cfa
DROSOPHILA_2:1632198_AT dm
DROSGENOME1:147943_AT dm
CHICKEN:GGAAFFX.21901.1.S1_AT similar to Hypothetical protein FLJ13798 gga
CHICKEN:GGAAFFX.3919.1.S1_S_AT similar to Hypothetical protein FLJ13798 gga
HG-U133_PLUS_2:220070_AT hypothetical protein FLJ13798 hs
HG-U133A:220070_AT hypothetical protein FLJ13798 hs
HG-U133A_2:220070_AT hypothetical protein FLJ13798 hs
U133_X3P:G13376122_3P_AT hypothetical protein FLJ13798 hs
HG-U95D:79326_AT hypothetical protein FLJ13798 hs
U133_X3P:HS.145717.0.A1_3P_AT Hypothetical protein FLJ13798 hs
HG-U133_PLUS_2:237229_AT Hypothetical protein FLJ13798 hs
HG-U133B:237229_AT Hypothetical protein FLJ13798 hs
HG-U95D:80023_AT Hypothetical protein FLJ13798 hs
MOUSE430_2:1451384_AT RIKEN cDNA 3110005O21 gene mm
MOE430A:1451384_AT RIKEN cDNA 3110005O21 gene mm
MOUSE430A_2:1451384_AT RIKEN cDNA 3110005O21 gene mm
MG-U74CV2:165675_AT RIKEN cDNA 3110005O21 gene mm
RG-U34C:RC_AI171363_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RG-U34C:RC_AI137432_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RAE230A:1371424_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RAT230_2:1371424_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99769 Hypothetical protein C06H2.3 [Caenorhabditis elegans] ref|NP_505831.1| C06H2.3 [Caenorhabditis elegans] 0.0
blast CAE75174 Hypothetical protein CBG23111 [Caenorhabditis briggsae] 0.0
blast NP_084118 hypothetical protein LOC77035 [Mus musculus] gb|AAH24807.1| Hypothetical protein LOC77035 [Mus musculus] dbj|BAB29111.1| unnamed protein product [Mus musculus] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 6.1E-6
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 3.2E-13
Sequence
Target Sequence 
>C. ELEGANS:192038_AT
gagacattcttccaatatgcctgccatcgaaaaatggtcatttccatttttacttcaaga
acttcacagtcgaacatttcctgtggaaattggaaccaaatattcagatgaaaattggtc
acaaaagttgatgacgttcaaggaatttattagaaactctgaaaatgaacggctctatct
tgcacaacatcgccttttcgatcaggttccacacttgaaacgtgacgtcataattccaga
tgtttgcttcggggaatcaagtaatcctgaaaatgttgacatgaatatgtggattgggcc
acaggatactgtatctccactccatacagatcctagaaagaatatgtttgtacaagttca
tggtacaaaactatttcggatggtggctcctgaaagttcagaatcagtgtatccatttga
tggaatactttcaaataccagtcaagtcgatgtcgagaatcccgatctcaaaatattccc
aaactttgaacaagtggaagtcctcgacgccgtcataaatcctggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACATTCTTCCAATATGCCTGCC 535 393 1140 Antisense
AGAACTTCACAGTCGAACATTTCCT 154 73 1197 Antisense
AATGAACGGCTCTATCTTGCACAAC 272 165 1303 Antisense
CTTGCACAACATCGCCTTTTCGATC 673 217 1318 Antisense
CTTTTCGATCAGGTTCCACACTTGA 243 221 1333 Antisense
GGGCCACAGGATACTGTATCTCCAC 285 493 1435 Antisense
TCTCCACTCCATACAGATCCTAGAA 84 611 1453 Antisense
AAGTCGATGTCGAGAATCCCGATCT 632 157 1583 Antisense
ATCCCGATCTCAAAATATTCCCAAA 129 39 1598 Antisense
GAACAAGTGGAAGTCCTCGACGCCG 281 353 1627 Antisense
TCGACGCCGTCATAAATCCTGGAGA 283 599 1643 Antisense
Sequence Source Affymetrix Proprietary Database