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[192035_s_at] BRCA1 C Terminus (BRCT) domain

Description T05F1.6B /REP_DB=WormBase Gene ID /WP=CE20035 /TR=Q9U381 /GB=CAB63309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BRCA1 C Terminus (BRCT) domain
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 53      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 639.5
(3)
P 		302.6
(-3)
P 		326
(-2.6)
P 		536.1
(1.2)
P 		337
B 611.1
(3)
P 		384.7
(-2.5)
P 		362.1
(-3)
P 		466.4
(-0.5)
P 		249
C 649.6
(3)
P 		392
(-3)
P 		413.6
(-2.5)
P 		529.8
(0.2)
P 		258
avr 633.4
(3) 		359.8
(-3) 		367.2
(-2.8) 		510.8
(0.3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 472.9
(0.5)
P 		588.5
(2.7)
P 		280.4
(-3)
P 		377.5
(-1.2)
P 		332
(-2.1)
P 		607.3
(3)
P 		327
B 423.4
(1.3)
P 		417.6
(1.2)
P 		289.7
(-3)
P 		372.3
(-0.3)
P 		317.1
(-2.1)
P 		474.6
(3)
P 		185
C 508.8
(3)
P 		346.7
(-1.4)
P 		490.1
(2.5)
P 		289.1
(-3)
P 		427.3
(0.8)
P 		473.7
(2)
P 		220
avr 468.4
(1.3) 		450.9
(0.6) 		353.4
(-2.8) 		346.3
(-3) 		358.8
(-2.6) 		518.5
(3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 232.9
(3)
P 		65.7
(-3)
P 		85.2
(-2.3)
P 		78.5
(-2.5)
P 		167
B 194.9
(3)
P 		95
(-2.4)
P 		83.9
(-3)
P 		99.4
(-2.2)
P 		111
C 215
(3)
P 		112.7
(-1.9)
P 		144.2
(-0.4)
P 		89.3
(-3)
P 		126
avr 214.3
(3) 		91.1
(-2.9) 		104.4
(-2.3) 		89.1
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 87.2
(-1.9)
P 		209.3
(3)
P 		61.1
(-3)
P 		95.7
(-1.6)
P 		100.2
(-1.4)
P 		147.9
(0.5)
P 		148
B 147.3
(1.3)
P 		139
(0.9)
P 		70.4
(-3)
P 		98.6
(-1.4)
P 		128.8
(0.3)
P 		177
(3)
P 		107
C 188.6
(3)
P 		105.8
(-0.8)
P 		124.7
(0.1)
P 		58.1
(-3)
P 		138.3
(0.7)
P 		158.6
(1.6)
P 		131
avr 141
(1.4) 		151.4
(2.2) 		85.4
(-2.9) 		84.1
(-3) 		122.4
(-0) 		161.2
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1699
Sequence Type Exemplar sequence
Representative Public ID T05F1.6B NCBI
Target Description T05F1.6B /REP_DB=WormBase Gene ID /WP=CE20035 /TR=Q9U381 /GB=CAB63309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BRCA1 C Terminus (BRCT) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026439 NCBI Caenorhabditis elegans T05F1.6 (hsr-9) mRNA, complete cds. 11/11 None
SNAP00000020942 ENSEMBL cdna:SNAP chromosome:CEL140:I:9634397:9638480:1 11/11 None
GENEFINDER00000020954 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9634397:9638480:1 11/11 None
T05F1.6 ENSEMBL cdna:known chromosome:CEL140:I:9634384:9639293:1 gene:T05F1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9636073-9638411(+) 100.0 100.0
Public Domain and Genome References
Gene Title BRCA1 C Terminus (BRCT) domain
Gene Symbol hsr-9
Ensembl T05F1.6
Entrez Gene 3565010 Entrez gene
SwissProt Q7JKP6 EMBL-EBI
WormBase CE36405 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAF31485 Hypothetical protein T05F1.6 [Caenorhabditis elegans] ref|NP_001021610.1| T05F1.6 [Caenorhabditis elegans] 0.0
blast T24541 hypothetical protein T05F1.6a - Caenorhabditis elegans 0.0
blast CAE60154 Hypothetical protein CBG03706 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 4.2E-5
Pfam IPR001357 EMBL-EBI BRCT 2.9
Pfam IPR001357 EMBL-EBI BRCT 4.2E-5
Pfam IPR001357 EMBL-EBI BRCT 2.9
Sequence
Target Sequence 
>C. ELEGANS:192035_S_AT
atggtgggatcgtcacggagcagcttaatagcttccaagagcgttactccaactacgaac
cattgctgatttctgatacgtactatcgtactcacaagtacttggcagctttagctcgtg
gtgttccttgtgttaacaatacatggttacaagcatgtggtgaacaggggaaatgtgtcg
actatacggactatgttcttcctgcaggtgcttcaatttttgacgagtctcaggatatgc
cagcgcccaaaaatccatcagagcttttgaaaggaacaacaatttatgtacactcaactc
actcagctcgtgaagtaacacaaactggacccggaggaactttcatcgagatttggaaac
ctattcttgagcttctcggtgctgatgtagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGGGATCGTCACGGAGCAGCT 69 51 1457 Antisense
AGCGTTACTCCAACTACGAACCATT 582 79 1496 Antisense
TTAGCTCGTGGTGTTCCTTGTGTTA 418 651 1567 Antisense
TACGGACTATGTTCTTCCTGCAGGT 445 647 1641 Antisense
TCCTGCAGGTGCTTCAATTTTTGAC 592 593 1656 Antisense
GACGAGTCTCAGGATATGCCAGCGC 145 379 1678 Antisense
CCAGCGCCCAAAAATCCATCAGAGC 296 273 1696 Antisense
CACTCAACTCACTCAGCTCGTGAAG 447 195 1747 Antisense
GGACCCGGAGGAACTTTCATCGAGA 298 523 1783 Antisense
GGAAACCTATTCTTGAGCTTCTCGG 449 527 1811 Antisense
GAGCTTCTCGGTGCTGATGTAGTCG 122 389 1825 Antisense
Sequence Source Affymetrix Proprietary Database