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[192034_s_at]

Description D1009.1 /REP_DB=WormBase Gene ID /WP=CE04285 /CHR=X /FEA=Sanger Annotation /DEF=fatty acid transporter protein (ST.LOUIS) TR:Q18916 protein_id:AAA81698.1
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 78      6grp_total > 57      4grp_total > 40      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1558
1 2 3 4 range
A 907.4
(-3)
P 		988.5
(-2.3)
P 		1647.7
(3)
P 		1510.4
(1.9)
P 		740
B 928.9
(-3)
P 		1210.1
(-1.9)
P 		2465.5
(3)
P 		1781.7
(0.3)
P 		1537
C 992.2
(-3)
P 		1000.1
(-3)
P 		2190.8
(3)
P 		1584.2
(-0)
P 		1199
avr 942.8
(-3) 		1066.2
(-2.4) 		2101.3
(3) 		1625.4
(0.5) 		1159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 1507.7
(-2.3)
P 		1749.3
(0.6)
P 		1465.6
(-2.8)
P 		1768.1
(0.8)
P 		1448.3
(-3)
P 		1953.7
(3)
P 		505
B 1658.1
(0.1)
P 		1438.4
(-2.8)
P 		1702.8
(0.6)
P 		1457
(-2.5)
P 		1419.9
(-3)
P 		1887
(3)
P 		467
C 2016.6
(2.9)
P 		1383
(-3)
P 		1584.3
(-1.1)
P 		1848
(1.3)
P 		1486
(-2)
P 		2029
(3)
P 		646
avr 1727.5
(0.3) 		1523.6
(-2.1) 		1584.2
(-1.4) 		1691
(-0.2) 		1451.4
(-3) 		1956.6
(3) 		505
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 330.4
(0.2)
P 		214.6
(-3)
P 		430.7
(3)
P 		221.1
(-2.8)
P 		216
B 296.2
(-3)
P 		298.9
(-2.9)
P 		571.3
(3)
P 		379.7
(-1.2)
P 		275
C 328.4
(-2.3)
P 		287.5
(-2.8)
P 		763.6
(3)
P 		267.1
(-3)
P 		497
avr 318.3
(-2) 		267
(-3) 		588.5
(3) 		289.3
(-2.6) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 277.9
(-3)
P 		622.1
(3)
P 		319.2
(-2.3)
P 		448.4
(-0)
P 		437
(-0.2)
P 		475.7
(0.4)
P 		344
B 576.9
(0.6)
P 		478.8
(-1.2)
P 		413.5
(-2.5)
P 		385.9
(-3)
P 		576.9
(0.6)
P 		703.6
(3)
P 		318
C 747.5
(3)
P 		422
(-2.2)
P 		403.2
(-2.5)
P 		371.6
(-3)
P 		480.8
(-1.3)
P 		679.2
(1.9)
P 		376
avr 534.1
(0.9) 		507.6
(0.2) 		378.6
(-3) 		402
(-2.4) 		498.2
(-0) 		619.5
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192034_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16180
Sequence Type Exemplar sequence
Representative Public ID D1009.1 NCBI
Target Description D1009.1 /REP_DB=WormBase Gene ID /WP=CE04285 /CHR=X /FEA=Sanger Annotation /DEF=fatty acid transporter protein (ST.LOUIS) TR:Q18916 protein_id:AAA81698.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077108 NCBI Caenorhabditis elegans D1009.1a (D1009.1) mRNA, complete cds. 11/11 None
SNAP00000025062 ENSEMBL cdna:SNAP chromosome:CEL140:X:8936574:8938854:1 11/11 None
GENEFINDER00000025067 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8936574:8938854:1 11/11 None
D1009.1a ENSEMBL cdna:known chromosome:CEL140:X:8931177:8939197:1 gene:D1009.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181138 2 1 NM_077108 192034_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8934489-8938853(+) 99.85 99.85
Public Domain and Genome References
Ensembl D1009.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81698 Hypothetical protein D1009.1a [Caenorhabditis elegans] ref|NP_509509.1| D1009.1a [Caenorhabditis elegans] 0.0
blast CAE57319 Hypothetical protein CBG00242 [Caenorhabditis briggsae] 0.0
blast CAA94602 Hypothetical protein F28D1.9 [Caenorhabditis elegans] ref|NP_502367.1| F28D1.9 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 1.0E-111
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-78
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.5E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509509.1 2 15-40,293-315
D1009.1a 2 15-40,293-315
SNAP00000025062 2 15-32,163-185
GENEFINDER00000025067 2 15-32,163-185
Sequence
Target Sequence 
>C. ELEGANS:192034_S_AT
ggatacttgtactttgtggaccgttgtggagacactttccgttggaaaggggagaacgtg
tcaactactgaagttgagggaattcttcagcctgtgatggatgtggaagatgcaactgtt
tatggagtcactgtcggtaaaatggaggggcgtgccggaatggctggtattgtcgtcaag
gatggaacggatgttgagaaattcatcgccgatattacttctcgactgaccgaaaatctg
gcgtcttacgcaatccctgttttcattcggctgtgcaaggaagttgatcgaaccggaacc
ttcaaactcaagaagactgatcttcaaaaacaaggttacgacctggttgcttgtaaagga
gacccaatttactactggtcagctgcagaaaaatcctacaaaccactgactgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTTGTACTTTGTGGACCGTT 142 509 1522 Antisense
GGACCGTTGTGGAGACACTTTCCGT 378 503 1539 Antisense
GAGGGAATTCTTCAGCCTGTGATGG 47 403 1597 Antisense
GCCGGAATGGCTGGTATTGTCGTCA 613 283 1675 Antisense
CATCGCCGATATTACTTCTCGACTG 189 211 1725 Antisense
AAATCTGGCGTCTTACGCAATCCCT 148 119 1755 Antisense
CCTGTTTTCATTCGGCTGTGCAAGG 138 267 1777 Antisense
GATCGAACCGGAACCTTCAAACTCA 522 415 1807 Antisense
GGTTACGACCTGGTTGCTTGTAAAG 477 505 1855 Antisense
ACCCAATTTACTACTGGTCAGCTGC 364 87 1883 Antisense
AAATCCTACAAACCACTGACTGACA 9 119 1912 Antisense
Sequence Source Affymetrix Proprietary Database