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[192033_s_at]

Description T24F1.6 /REP_DB=WormBase Gene ID /WP=CE02366 /TR=Q17517 /GB=CAA90141.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calcium channel alpha-2 subunit
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 30      6grp_total > 15      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1149
1 2 3 4 range
A 1627.6
(3)
P 		599.8
(-2.4)
P 		478.3
(-3)
P 		658.9
(-2.1)
P 		1149
B 1426.5
(3)
P 		629.8
(-2.1)
P 		491.1
(-3)
P 		793.7
(-1.1)
P 		935
C 1471.4
(3)
P 		518.7
(-3)
P 		548.8
(-2.8)
P 		703.7
(-1.8)
P 		953
avr 1508.5
(3) 		582.8
(-2.5) 		506.1
(-3) 		718.8
(-1.7) 		1002

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 867
1 2 3 4 5 6 range
A 1189.7
(3)
P 		1145.7
(2.6)
P 		581.8
(-1.9)
P 		585.3
(-1.9)
P 		561.1
(-2.1)
P 		449
(-3)
P 		741
B 1293.8
(3)
P 		1095.4
(1.6)
P 		782.3
(-0.7)
P 		659.2
(-1.6)
P 		480.6
(-2.9)
P 		465.5
(-3)
P 		828
C 1095.6
(3)
P 		953.7
(1.7)
P 		826.4
(0.6)
P 		725
(-0.3)
P 		556.4
(-1.8)
P 		427.3
(-3)
P 		668
avr 1193
(3) 		1064.9
(2) 		730.2
(-0.7) 		656.5
(-1.3) 		532.7
(-2.3) 		447.3
(-3) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 592.6
(3)
P 		130.2
(-2.6)
P 		125
(-2.7)
P 		96.5
(-3)
P 		496
B 454.9
(3)
P 		155.5
(-2.3)
P 		113.8
(-3)
P 		169.1
(-2)
P 		341
C 487.1
(3)
P 		149.1
(-2.5)
P 		191.3
(-1.8)
P 		118.7
(-3)
P 		368
avr 511.5
(3) 		144.9
(-2.7) 		143.4
(-2.8) 		128.1
(-3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 219.3
(-0.8)
P 		407.5
(3)
P 		126.7
(-2.6)
P 		148.4
(-2.2)
P 		169.3
(-1.8)
P 		109.3
(-3)
P 		298
B 450.2
(3)
P 		364.6
(1.1)
P 		190
(-2.6)
P 		174.6
(-3)
P 		195.3
(-2.5)
P 		173.6
(-3)
P 		277
C 406.1
(3)
P 		291
(0.4)
P 		210.3
(-1.5)
P 		145.8
(-2.9)
P 		180
(-2.2)
P 		143
(-3)
P 		263
avr 358.5
(3) 		354.4
(2.9) 		175.7
(-2.1) 		156.3
(-2.6) 		181.5
(-1.9) 		142
(-3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192033_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2866
Sequence Type Exemplar sequence
Representative Public ID T24F1.6 NCBI
Target Description T24F1.6 /REP_DB=WormBase Gene ID /WP=CE02366 /TR=Q17517 /GB=CAA90141.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calcium channel alpha-2 subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027193(11), NM_001027192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027193 NCBI Caenorhabditis elegans T24F1.6b (T24F1.6) mRNA, complete cds. 11/11 None
NM_001027192 NCBI Caenorhabditis elegans T24F1.6a (T24F1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000017170 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11323088:11327109:-1 11/11 None
T24F1.6b ENSEMBL cdna:known chromosome:CEL140:II:11322957:11328898:-1 gene:T24F1.6 11/11 None
T24F1.6a ENSEMBL cdna:known chromosome:CEL140:II:11323088:11329280:-1 gene:T24F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11323084-11329350(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24F1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90141 Hypothetical protein T24F1.6a [Caenorhabditis elegans] emb|CAA90091.2| Hypothetical protein T24F1.6a [Caenorhabditis elegans] ref|NP_001022363.1| T24F1.6a [Caenorhabditis elegans] 0.0
blast CAE54898 Hypothetical protein T24F1.6b [Caenorhabditis elegans] emb|CAE54883.1| Hypothetical protein T24F1.6b [Caenorhabditis elegans] ref|NP_001022364.1| T24F1.6b [Caenorhabditis elegans] 0.0
blast CAE59531 Hypothetical protein CBG02926 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004010 EMBL-EBI Cache domain 9.6E-33
Pfam IPR004010 EMBL-EBI Cache domain 2.2
Pfam IPR004010 EMBL-EBI Cache domain 9.6E-33
Pfam IPR004010 EMBL-EBI Cache domain 2.2
Sequence
Target Sequence 
>C. ELEGANS:192033_S_AT
caaagccaagcgagttgctccgtggagcagcgcggctcctggctcatccagcatacttcg
ttactttgttacctcaattttcaagctcgctaaaacttcgttctggagaaatttgttaga
atcggctttaacattggttgacgcgcaaccatcaatgaccggaaacacatgcacatttca
aaaaatcaaacccttcgagagatgttttatgaagttcttccactatcgaatgaccctcaa
catcacaaaacaacttcagttgaccggaatgtcaacgtgttcaagatatgccaagctgta
tcccgtgccacatacaaccctctcacttattatagcggatcgtgcgtgtagtcagtatag
gcctaagcgcatttttgaatcggagcccaggaaactcgaaaaatgcgatgtggttcactc
tcacgctcgccggagacctgatgctctgaatgattggaagatcgacttacagaataaaca
cgtggattgcatcaatgacgtcatgcaccatgcaaaatcctatttctcgatcgtcttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGCCAAGCGAGTTGCTCCGTGG 399 187 2889 Antisense
GCATACTTCGTTACTTTGTTACCTC 630 305 2939 Antisense
GTTACCTCAATTTTCAAGCTCGCTA 567 445 2956 Antisense
AAGCTCGCTAAAACTTCGTTCTGGA 183 151 2971 Antisense
CGCGCAACCATCAATGACCGGAAAC 617 255 3030 Antisense
AGTTCTTCCACTATCGAATGACCCT 90 63 3101 Antisense
AAGATATGCCAAGCTGTATCCCGTG 333 153 3171 Antisense
ACAACCCTCTCACTTATTATAGCGG 320 111 3202 Antisense
ATAGCGGATCGTGCGTGTAGTCAGT 573 21 3220 Antisense
ATGCGATGTGGTTCACTCTCACGCT 707 41 3291 Antisense
AAATCCTATTTCTCGATCGTCTTGC 198 119 3403 Antisense
Sequence Source Affymetrix Proprietary Database