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[192031_at]

Description C53D6.7 /REP_DB=WormBase Gene ID /WP=CE05492 /TR=Q18813 /GB=CAA94229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=galactoside-binding lectin like
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.7
(-3)
A 		15.7
(3)
A 		7.3
(-2)
A 		10
(-0.4)
A 		10
B 15.2
(-0.5)
A 		23.4
(2.6)
A 		8.6
(-3)
A 		24.4
(3)
A 		16
C 8.2
(-2.2)
A 		6.3
(-2.4)
A 		2.1
(-3)
A 		45.5
(3)
A 		43
avr 9.7
(-1.9) 		15.1
(-0.3) 		6
(-3) 		26.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 5.8
(-3)
A 		9.7
(-2.8)
A 		6.7
(-3)
A 		6.8
(-3)
A 		96
(1.3)
P 		131.7
(3)
P 		126
B 6.6
(-3)
A 		6.3
(-3)
A 		17.4
(-2.3)
A 		14.5
(-2.5)
A 		45.9
(-0.4)
A 		96.9
(3)
P 		91
C 29.4
(-1.6)
A 		5.6
(-2.9)
A 		28.9
(-1.6)
A 		3.4
(-3)
A 		65.9
(0.4)
P 		113.4
(3)
P 		110
avr 13.9
(-2.6) 		7.2
(-3) 		17.7
(-2.4) 		8.2
(-2.9) 		69.3
(0.5) 		114
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.1
(-1.1)
A 		3.4
(3)
A 		1.9
(-1.7)
A 		1.5
(-3)
A 		2
B 4.9
(1.6)
A 		5.8
(3)
A 		2
(-3)
A 		5.2
(2.1)
A 		4
C 2.7
(-1.3)
A 		1.8
(-2.1)
A 		0.7
(-3)
A 		7.7
(3)
A 		7
avr 3.2
(0.1) 		3.7
(1) 		1.5
(-3) 		4.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.5
(-2.5)
A 		1.5
(-2.9)
A 		1.7
(-2.9)
A 		29
(2.4)
P 		32.1
(3)
P 		31
B 2.3
(-3)
A 		2.1
(-3)
A 		4.2
(-2.6)
A 		3.8
(-2.7)
A 		18.6
(-0.1)
A 		36.2
(3)
P 		34
C 10.9
(-1.4)
A 		1.7
(-2.8)
A 		7.4
(-1.9)
A 		0.7
(-3)
A 		21.3
(0.3)
P 		37.9
(3)
P 		37
avr 4.8
(-2.5) 		2.4
(-2.9) 		4.4
(-2.6) 		2.1
(-3) 		23
(0.8) 		35.4
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10288
Sequence Type Exemplar sequence
Representative Public ID C53D6.7 NCBI
Target Description C53D6.7 /REP_DB=WormBase Gene ID /WP=CE05492 /TR=Q18813 /GB=CAA94229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=galactoside-binding lectin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027923(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027923 NCBI Caenorhabditis elegans C53D6.10 (C53D6.10) mRNA, complete cds. 10/11 None
SNAP00000020669 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9033615:9037142:-1 10/11 None
GENEFINDER00000020675 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9033615:9037142:-1 11/11 None
C53D6.10 ENSEMBL cdna:known chromosome:CEL140:IV:9033615:9034186:-1 gene:C53D6.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9033620-9037148(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53D6.10
Entrez Gene 3565065 Entrez gene
SwissProt Q6BEU2 EMBL-EBI
WormBase CE36990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94229 Hypothetical protein C53D6.7 [Caenorhabditis elegans] ref|NP_501571.2| C53D6.7 [Caenorhabditis elegans] 1.0E-159
blast CAA94229 Hypothetical protein C53D6.7 [Caenorhabditis elegans] ref|NP_501571.2| C53D6.7 [Caenorhabditis elegans] 1.0E-140
blast CAH04652 Hypothetical protein C53D6.10 [Caenorhabditis elegans] ref|NP_001023094.1| C53D6.10 [Caenorhabditis elegans] 4.0E-41
blast CAH04652 Hypothetical protein C53D6.10 [Caenorhabditis elegans] ref|NP_001023094.1| C53D6.10 [Caenorhabditis elegans] 3.0E-40
blast CAE59442 Hypothetical protein CBG02815 [Caenorhabditis briggsae] 5.0E-35
blast CAC42392 Hypothetical protein ZK892.1b [Caenorhabditis elegans] ref|NP_001022531.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.3E-6
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 8.0E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023094.1 1 136-158
C53D6.10 1 136-158
SNAP00000020669 1 418-440
GENEFINDER00000020675 1 462-484
Sequence
Target Sequence 
>C. ELEGANS:192031_AT
gttaatcgttcttatttatctactcgagagtatcggatcgaagagaatcttgaaagtgtc
aaccaatatggcagataatcaatatgaagatcttgtaccacctggcggtcctactccaga
aaaggcagcaattccagcatttccagaatcgaatgctccttcacaaccagaaatcaatat
tcctcagtttccaaatgctcaagggaccggagcacctccacctccaacaccacttgcaaa
tccgacagaagacaacaaaaaagcagtttctgttaaagacagttcaaaagttgatagtaa
aatagtgaaggcaaccggtgatggaaaaaagaagaaaaatggaaagagtagtgagacaaa
gactaagaataaggttaagaaaaacaaatcaaaggccagtgctgatgagagtcaaatggg
aagtgcagaagaacgtttgtcaactaatagaccatctactcttgattattgtcaagttgc
tattctcataactcttctcgtcatcatctgtcttgtttccattcccgttttgttgatttc
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAATCGTTCTTATTTATCTACTC 387 445 1113 Antisense
TATGAAGATCTTGTACCACCTGGCG 31 657 1195 Antisense
CCTGGCGGTCCTACTCCAGAAAAGG 381 265 1213 Antisense
AAAAGGCAGCAATTCCAGCATTTCC 321 133 1232 Antisense
TCCAGAATCGAATGCTCCTTCACAA 290 589 1254 Antisense
ATATTCCTCAGTTTCCAAATGCTCA 307 19 1289 Antisense
ATGCTCAAGGGACCGGAGCACCTCC 373 41 1307 Antisense
ACACCACTTGCAAATCCGACAGAAG 477 109 1339 Antisense
GACCATCTACTCTTGATTATTGTCA 388 383 1562 Antisense
AGTTGCTATTCTCATAACTCTTCTC 364 65 1587 Antisense
TCCATTCCCGTTTTGTTGATTTCTC 626 591 1630 Antisense
Sequence Source Affymetrix Proprietary Database