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[192027_s_at] transcription factor ATF4 like

Description T04C10.4 /REP_DB=WormBase Gene ID /WP=CE06355 /TR=Q22156 /GB=CAA93757.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=transcription factor ATF4 like
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 67      6grp_total > 40      4grp_total > 42      6grp_highest_sub > 03_04      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 676
1 2 3 4 range
A 2058.7
(-2.2)
P 		2644.7
(3)
P 		1968.6
(-3)
P 		2109.1
(-1.8)
P 		676
B 2185.1
(-3)
P 		2202.1
(-2.5)
P 		2381.7
(3)
P 		2355.8
(2.2)
P 		197
C 2332.9
(1.3)
P 		2135.4
(-3)
P 		2409.3
(3)
P 		2181.4
(-2)
P 		274
avr 2192.2
(-3) 		2327.4
(3) 		2253.2
(-0.3) 		2215.4
(-2) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1105
1 2 3 4 5 6 range
A 1934.4
(1.8)
P 		2051.1
(3)
P 		1900.9
(1.5)
P 		2032.6
(2.8)
P 		1599.7
(-1.6)
P 		1461.6
(-3)
P 		590
B 1762.8
(1)
P 		1769.2
(1.1)
P 		1952.6
(2.3)
P 		2050.3
(3)
P 		1176.5
(-3)
P 		1280.5
(-2.3)
P 		874
C 1940.1
(0.6)
P 		1848.5
(-0)
P 		2281.5
(3)
P 		2033.8
(1.3)
P 		1418.1
(-3)
P 		1507.8
(-2.4)
P 		863
avr 1879.1
(1.5) 		1889.6
(1.6) 		2045
(3) 		2038.9
(2.9) 		1398.1
(-3) 		1416.6
(-2.8) 		647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 749.6
(3)
P 		574.1
(0.6)
P 		514.6
(-0.2)
P 		308.7
(-3)
P 		441
B 696.8
(3)
P 		543.9
(-1.7)
P 		551.9
(-1.5)
P 		502
(-3)
P 		195
C 772.3
(2.1)
P 		613.9
(0.1)
P 		839.7
(3)
P 		367.8
(-3)
P 		472
avr 739.6
(3) 		577.3
(0.2) 		635.4
(1.2) 		392.8
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 356.6
(-3)
P 		729.5
(3)
P 		414
(-2.1)
P 		515.5
(-0.4)
P 		482.7
(-1)
P 		355.9
(-3)
P 		374
B 613.4
(3)
P 		588.9
(1.9)
P 		474.1
(-3)
P 		543.1
(-0)
P 		478
(-2.8)
P 		477.5
(-2.9)
P 		139
C 719.1
(3)
P 		564
(-0)
P 		580.7
(0.3)
P 		409
(-3)
P 		458.9
(-2)
P 		504.8
(-1.1)
P 		310
avr 563
(0.9) 		627.5
(3) 		489.6
(-1.6) 		489.2
(-1.6) 		473.2
(-2.1) 		446.1
(-3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192027_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17448
Sequence Type Exemplar sequence
Representative Public ID T04C10.4 NCBI
Target Description T04C10.4 /REP_DB=WormBase Gene ID /WP=CE06355 /TR=Q22156 /GB=CAA93757.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=transcription factor ATF4 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078055 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-5) (atf-5) mRNA, complete cds. 11/11 None
SNAP00000038428 ENSEMBL cdna:SNAP chromosome:CEL140:X:14809265:14810662:-1 9/11 None
GENEFINDER00000038435 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14809265:14810537:-1 11/11 None
T04C10.4.1 ENSEMBL cdna:known chromosome:CEL140:X:14809077:14811011:-1 gene:T04C10.4 11/11 None
T04C10.4.2 ENSEMBL cdna:known chromosome:CEL140:X:14809077:14810767:-1 gene:T04C10.4 11/11 None
T04C10.4.3 ENSEMBL cdna:known chromosome:CEL140:X:14809265:14810677:-1 gene:T04C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14809264-14810459(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor ATF4 like
Gene Symbol atf-5
Ensembl T04C10.4
Entrez Gene 181576 Entrez gene
SwissProt Q22156 EMBL-EBI
WormBase CE06355 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93757 Hypothetical protein T04C10.4 [Caenorhabditis elegans] ref|NP_510456.1| ATF (cAMP-dependent transciption factor) family member (atf-5) [Caenorhabditis elegans] 2.0E-75
blast CAA93757 Hypothetical protein T04C10.4 [Caenorhabditis elegans] ref|NP_510456.1| ATF (cAMP-dependent transciption factor) family member (atf-5) [Caenorhabditis elegans] 3.0E-75
blast CAA93757 Hypothetical protein T04C10.4 [Caenorhabditis elegans] ref|NP_510456.1| ATF (cAMP-dependent transciption factor) family member (atf-5) [Caenorhabditis elegans] 8.0E-57
blast CAE63232 Hypothetical protein CBG07594 [Caenorhabditis briggsae] 3.0E-46
blast CAE63232 Hypothetical protein CBG07594 [Caenorhabditis briggsae] 8.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 7.2E-9
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 7.2E-9
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 7.2E-9
Sequence
Target Sequence 
>C. ELEGANS:192027_S_AT
caaaatccacagttcttgctttataatgggatgcacaatcaaacccattccaccccacaa
tatcataaccatcatcatcatcaccatcaatctccgacatatcctcaatcatatttcaac
ccctactcccatcaatcttatcaacagcatcatttgaactccgatgtcaacttccaaatg
gttccacaaagcacttcggttccaccagatccgttttgctcaattgagccaatggagact
aatgtacaagcaaaagaacaaattctcgaagaaatcgtgcgcgagtgcgaagaaatcgag
cgtcgttccaactcgagcgcgtctccagcctcaaattggtcttcagatgaacatgactct
caatccgaaaaatcttaccacccatacaaaaccccagaaaagaaggaacgaaagaaggct
caaaaccgtctcgcagctaccagataccgtgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATCCACAGTTCTTGCTTTATA 205 191 31 Antisense
CACCCCACAATATCATAACCATCAT 311 201 81 Antisense
AACTCCGATGTCAACTTCCAAATGG 609 141 187 Antisense
AATGGTTCCACAAAGCACTTCGGTT 83 161 207 Antisense
CACCAGATCCGTTTTGCTCAATTGA 110 203 233 Antisense
AAGAAATCGAGCGTCGTTCCAACTC 90 153 320 Antisense
GTCTCCAGCCTCAAATTGGTCTTCA 491 469 351 Antisense
GATGAACATGACTCTCAATCCGAAA 172 413 376 Antisense
CAATCCGAAAAATCTTACCACCCAT 152 1 391 Antisense
AAAGAAGGCTCAAAACCGTCTCGCA 345 123 441 Antisense
TCGCAGCTACCAGATACCGTGAAAA 412 599 461 Antisense
Sequence Source Affymetrix Proprietary Database