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[192024_s_at] 7TM chemoreceptor, str family /// 7TM chemoreceptor, str family

Description Y45G12C.12 /REP_DB=WormBase Gene ID /WP=CE21945 /GEN=str-154 /TR=Q9N4Y0 /GB=AAF60586.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 70      4grp_total > 27      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 5.4
(-3)
A 		11.2
(-1.1)
A 		5.6
(-2.9)
A 		23.7
(3)
A 		18
B 14.8
(3)
A 		8.2
(-1.1)
A 		5.1
(-3)
A 		6.6
(-2.1)
A 		10
C 7.6
(-3)
A 		51.1
(3)
A 		14.6
(-2)
A 		47.7
(2.5)
A 		44
avr 9.3
(-2.7) 		23.5
(2.1) 		8.4
(-3) 		26
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 11.3
(-2.7)
A 		8.1
(-3)
A 		50.7
(0.4)
A 		83.1
(3)
A 		17.3
(-2.3)
A 		8.9
(-2.9)
A 		75
B 14.2
(-2.8)
A 		16.4
(-2.5)
A 		39.7
(0.3)
A 		61.9
(3)
A 		12.4
(-3)
A 		29.3
(-1)
A 		50
C 15.8
(-2.4)
A 		65
(0.9)
A 		7.9
(-2.9)
A 		97.4
(3)
A 		13.8
(-2.5)
A 		6.6
(-3)
A 		91
avr 13.8
(-3) 		29.8
(-1.6) 		32.8
(-1.3) 		80.8
(3) 		14.5
(-2.9) 		14.9
(-2.9) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-1.5)
A 		2.4
(-0.3)
A 		1.5
(-3)
A 		3.5
(3)
A 		2
B 4.7
(3)
A 		2
(-1.6)
A 		1.2
(-3)
A 		1.4
(-2.7)
A 		4
C 2.5
(-3)
A 		14.7
(3)
A 		5.1
(-1.7)
A 		8
(-0.3)
A 		12
avr 3.1
(-2.2) 		6.4
(3) 		2.6
(-3) 		4.3
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.1
(-3)
A 		2.9
(-2.7)
A 		11
(-0.2)
A 		21.1
(3)
A 		5.2
(-2)
A 		2.2
(-3)
A 		19
B 5
(-3)
A 		5.5
(-2.7)
A 		9.6
(-0.6)
A 		16.4
(3)
A 		5
(-3)
A 		10.9
(0.1)
A 		11
C 5.8
(-1.7)
A 		19.8
(3)
A 		2
(-3)
A 		19.6
(2.9)
A 		4.5
(-2.2)
A 		2.2
(-2.9)
A 		18
avr 4.3
(-3) 		9.4
(-0.9) 		7.5
(-1.7) 		19
(3) 		4.9
(-2.8) 		5.1
(-2.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192024_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15563
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.12 NCBI
Target Description Y45G12C.12 /REP_DB=WormBase Gene ID /WP=CE21945 /GEN=str-154 /TR=Q9N4Y0 /GB=AAF60586.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071271(11), NM_071298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071271 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-267) (str-267) mRNA, complete cds. 11/11 None
NM_071298 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-154) (str-154) mRNA, complete cds. 11/11 None
F56A4.7 ENSEMBL cdna:known chromosome:CEL140:V:2449346:2452177:-1 gene:F56A4.7 11/11 None
Y45G12C.12 ENSEMBL cdna:known chromosome:CEL140:V:2557625:2560567:-1 gene:Y45G12C.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032940 6/11 Cross Hyb Matching Probes None
SNAP00000032942 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032959 8/11 Cross Hyb Matching Probes None
SNAP00000043312 6/11 Cross Hyb Matching Probes None
SNAP00000043315 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043326 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2449345-2452288(-) 100.0 100.0
chrV:2557624-2560567(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
7TM chemoreceptor, str family
Gene Symbol str-267
str-154
Ensembl F56A4.7
Y45G12C.12
Entrez Gene 186350 Entrez gene
192017 Entrez gene
SwissProt Q9N5R4 EMBL-EBI
WormBase CE21945 Wormbase
CE21945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-175
blast NP_503672 Seven TM Receptor family member (str-267) [Caenorhabditis elegans] 1.0E-154
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-152
blast NP_503672 Seven TM Receptor family member (str-267) [Caenorhabditis elegans] 1.0E-152
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503672.1 6 7-29,56-78,97-119,162-184,213-235,245-267
NP_503699.1 7 10-32,45-67,93-115,134-156,202-224,253-275,285-307
F56A4.7 6 7-29,56-78,97-119,162-184,213-235,245-267
Y45G12C.12 7 10-32,45-67,93-115,134-156,202-224,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:192024_S_AT
tggcgtcttattttctggattctcctgtccattattggtggagccatattagggctaatg
ttttatactataggttctcgtcaggaaatttcagacggtttgaaagtgagtttggaaact
ttgtatgatttgaatattaatcgcatattgtattgtacatttccgtattggttgcccacc
gttgaaaatcagggattgacagtaaaagatattatggcaaatttggcaattacgatatca
atggcatttcctattctcattatcgccttttgcggaaccaagacttatggaaaagtcaag
aatctgacagaacatggaaaaaatgaatactcaaagcggctccaattgcaactttacaaa
gctcttgtcgcacaggtaattattccaactatttttctgtttctccccactgtattcatc
ggggcaagtccactgttcaagcttaatatcccatgggctagtcttccattatcgatactt
ttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGTCTTATTTTCTGGATTCTCC 442 545 406 Antisense
GGATTCTCCTGTCCATTATTGGTGG 363 509 422 Antisense
GTACATTTCCGTATTGGTTGCCCAC 97 459 560 Antisense
TGGTTGCCCACCGTTGAAAATCAGG 543 549 574 Antisense
TATCAATGGCATTTCCTATTCTCAT 693 659 641 Antisense
CTATTCTCATTATCGCCTTTTGCGG 333 223 656 Antisense
GCGGCTCCAATTGCAACTTTACAAA 481 293 741 Antisense
TTCTCCCCACTGTATTCATCGGGGC 95 691 806 Antisense
TATTCATCGGGGCAAGTCCACTGTT 628 659 818 Antisense
TCCACTGTTCAAGCTTAATATCCCA 131 587 834 Antisense
GTCTTCCATTATCGATACTTTTTTC 417 467 866 Antisense
Sequence Source Affymetrix Proprietary Database