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[192023_s_at] protein tyrosine phosphatase

Description C33F10.8 /REP_DB=WormBase Gene ID /WP=CE04141 /TR=Q18385 /GB=AAK31476.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 10.7
(-3)
A 		37.2
(3)
A 		18.4
(-1.3)
A 		17.3
(-1.5)
A 		27
B 5
(-2)
A 		4.7
(-2.3)
A 		3.9
(-3)
A 		10.7
(3)
A 		7
C 11.9
(-2.1)
A 		43.4
(3)
A 		6.5
(-3)
A 		14.8
(-1.7)
A 		37
avr 9.2
(-3) 		28.4
(3) 		9.6
(-2.9) 		14.3
(-1.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 33
(-0.3)
A 		7.6
(-2.9)
A 		6.4
(-3)
A 		14.7
(-2.1)
A 		64.5
(3)
A 		36
(0.1)
A 		58
B 7.2
(-3)
A 		14.6
(-2.3)
A 		8.4
(-2.9)
A 		51.5
(1)
A 		73.6
(3)
A 		61.5
(1.9)
P 		66
C 8.3
(-2.9)
A 		19.7
(-1)
A 		7.5
(-3)
A 		14.7
(-1.8)
A 		43
(2.7)
A 		45
(3)
P 		38
avr 16.2
(-2) 		14
(-2.3) 		7.4
(-3) 		27
(-0.8) 		60.4
(3) 		47.5
(1.5) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.9
(-1.5)
A 		8.1
(3)
A 		4.8
(-0.5)
A 		2.5
(-3)
A 		6
B 1.6
(0)
A 		1.1
(-2.1)
A 		0.9
(-3)
A 		2.3
(3)
A 		1
C 4
(-2)
A 		12.5
(3)
A 		2.3
(-3)
A 		2.5
(-2.9)
A 		10
avr 3.2
(-2) 		7.2
(3) 		2.7
(-2.6) 		2.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.1
(-1.4)
A 		2.7
(-2.6)
A 		1.4
(-3)
A 		3.7
(-2.2)
A 		19.5
(3)
A 		8.8
(-0.5)
A 		18
B 2.5
(-2.9)
A 		4.9
(-2.4)
A 		2
(-3)
A 		13.6
(-0.5)
A 		29.9
(3)
A 		22.9
(1.5)
P 		28
C 3.1
(-2.5)
A 		6
(-1.1)
A 		1.9
(-3)
A 		3
(-2.5)
A 		13.9
(2.5)
A 		15
(3)
P 		13
avr 3.9
(-2.3) 		4.5
(-2.2) 		1.8
(-3) 		6.8
(-1.4) 		21.1
(3) 		15.6
(1.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192023_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4272
Sequence Type Exemplar sequence
Representative Public ID C33F10.8 NCBI
Target Description C33F10.8 /REP_DB=WormBase Gene ID /WP=CE04141 /TR=Q18385 /GB=AAK31476.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062463 NCBI Caenorhabditis elegans C33F10.8 (C33F10.8) mRNA, complete cds. 11/11 None
SNAP00000016469 ENSEMBL cdna:SNAP chromosome:CEL140:II:4823368:4825092:-1 11/11 None
GENEFINDER00000016480 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4823368:4825092:-1 11/11 None
C33F10.8 ENSEMBL cdna:known chromosome:CEL140:II:4823368:4825183:-1 gene:C33F10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4823366-4827774(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Ensembl C33F10.8
Entrez Gene 173829 Entrez gene
SwissProt Q18385 EMBL-EBI
WormBase CE29695 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494864 C33F10.8 [Caenorhabditis elegans] gb|AAL16312.1| Hypothetical protein C33F10.8 [Caenorhabditis elegans] 0.0
blast T15749 hypothetical protein C33F10.8 - Caenorhabditis elegans 0.0
blast CAE73335 Hypothetical protein CBG20764 [Caenorhabditis briggsae] 4.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-67
Sequence
Target Sequence 
>C. ELEGANS:192023_S_AT
gtgtatccgatgtactacccaaacaaaccagaaacattcaacaattttggacaattcttc
gtttattgcaagaccgtcactcagccaaagacgaaatacggatgcaaagagtacaagttc
gaattggtggttcaagcggacaatgaggaacgccgatcagttcgtctgtaccattatcct
cattggacaaagaatatggttccagcaagttcaaaagtagtgctgaatcttgttaagaag
attggaaagaagaagagtcaagctccagtggttgttcaatgtgagacgggagtcaaccaa
tcggcagaattggttttcgtggatgcaatgtgcacattgttgacaagacaagtggaagtt
aattttgatgttttattccgtcaaatgcgtagtcaaaaggcgcttgcaatgacgcaactt
cttcattttcttcactcaattgcaacggtcatgaagtttatcaagattcggttctcagca
atgccgtcacattatgcagcccaaatggattcaattttgcctgcaatctccaaggatttt
ggctacaatatgtgtattgagccatcagagccccagctgagaagtccaacaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTATCCGATGTACTACCCAAACA 524 485 1834 Antisense
TATTGCAAGACCGTCACTCAGCCAA 524 665 1897 Antisense
TGAGGAACGCCGATCAGTTCGTCTG 516 565 1977 Antisense
TCGTCTGTACCATTATCCTCATTGG 466 605 1995 Antisense
GAGTCAAGCTCCAGTGGTTGTTCAA 424 399 2088 Antisense
GGCGCTTGCAATGACGCAACTTCTT 158 543 2232 Antisense
TCTTCATTTTCTTCACTCAATTGCA 381 617 2253 Antisense
GATTCGGTTCTCAGCAATGCCGTCA 239 427 2298 Antisense
TGCCGTCACATTATGCAGCCCAAAT 1 587 2315 Antisense
TGTGTATTGAGCCATCAGAGCCCCA 584 555 2384 Antisense
GCCCCAGCTGAGAAGTCCAACAATG 108 287 2403 Antisense
Sequence Source Affymetrix Proprietary Database