[Home] | [Total List]

[192021_at] Zinc finger, C2H2 (2 domains)

Description T05G11.1 /REP_DB=WormBase Gene ID /WP=CE18930 /TR=O45457 /GB=CAA19434.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 (2 domains)
Cluster 6grp_total > 67      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 4.9
(-3)
A 		40.2
(3)
A 		7.3
(-2.6)
A 		23.5
(0.2)
A 		35
B 33.6
(3)
A 		3.6
(-3)
A 		11.5
(-1.4)
A 		6.4
(-2.4)
A 		30
C 11.5
(1.6)
A 		8.3
(-0.1)
A 		3
(-3)
A 		14.1
(3)
A 		11
avr 16.7
(2.6) 		17.4
(3) 		7.3
(-3) 		14.7
(1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 13.5
(-2.6)
A 		9
(-2.7)
A 		9.2
(-2.7)
A 		2.5
(-3)
A 		27.8
(-2)
A 		150.5
(3)
A 		148
B 5.4
(-2.8)
A 		38.2
(-1.5)
A 		7
(-2.8)
A 		1.8
(-3)
A 		21.8
(-2.2)
A 		145
(3)
P 		143
C 9.3
(-2.8)
A 		32.2
(-1.7)
A 		29.3
(-1.9)
A 		5.4
(-3)
A 		10.2
(-2.8)
A 		130.5
(3)
P 		125
avr 9.4
(-2.7) 		26.5
(-2) 		15.2
(-2.5) 		3.2
(-3) 		19.9
(-2.3) 		142
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.8
(-3)
A 		8.7
(3)
A 		1.9
(-2.9)
A 		3.4
(-1.6)
A 		7
B 10.7
(3)
A 		0.9
(-3)
A 		2.7
(-1.9)
A 		1.4
(-2.7)
A 		10
C 3.8
(3)
A 		2.4
(-0.1)
A 		1.1
(-3)
A 		2.4
(-0.1)
A 		3
avr 5.4
(3) 		4
(0.6) 		1.9
(-3) 		2.4
(-2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		3.2
(-2.6)
A 		2
(-2.8)
A 		0.6
(-3)
A 		8.4
(-1.7)
A 		36.6
(3)
A 		36
B 1.9
(-2.8)
A 		12.7
(-1.6)
A 		1.7
(-2.9)
A 		0.5
(-3)
A 		8.9
(-2.1)
A 		54.1
(3)
P 		54
C 3.4
(-2.7)
A 		9.8
(-1.8)
A 		7.4
(-2.1)
A 		1.1
(-3)
A 		3.3
(-2.7)
A 		43.7
(3)
P 		43
avr 2.6
(-2.7) 		8.6
(-1.9) 		3.7
(-2.6) 		0.7
(-3) 		6.9
(-2.2) 		44.8
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14417
Sequence Type Exemplar sequence
Representative Public ID T05G11.1 NCBI
Target Description T05G11.1 /REP_DB=WormBase Gene ID /WP=CE18930 /TR=O45457 /GB=CAA19434.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074588 NCBI Caenorhabditis elegans T05G11.1 (T05G11.1) mRNA, complete cds. 11/11 None
SNAP00000019520 ENSEMBL cdna:SNAP chromosome:CEL140:V:15929256:15930043:-1 11/11 None
GENEFINDER00000019528 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15929256:15929931:-1 9/11 None
T05G11.1 ENSEMBL cdna:known chromosome:CEL140:V:15929372:15930955:-1 gene:T05G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15929371-15930955(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 (2 domains)
Ensembl T05G11.1
Entrez Gene 188142 Entrez gene
SwissProt O45457 EMBL-EBI
WormBase CE18930 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04303 Hypothetical protein T05G11.1 [Caenorhabditis elegans] emb|CAA19434.1| Hypothetical protein T05G11.1 [Caenorhabditis elegans] ref|NP_506989.1| T05G11.1 [Caenorhabditis elegans] 0.0
blast CAB04303 Hypothetical protein T05G11.1 [Caenorhabditis elegans] emb|CAA19434.1| Hypothetical protein T05G11.1 [Caenorhabditis elegans] ref|NP_506989.1| T05G11.1 [Caenorhabditis elegans] 1.0E-119
blast CAB04303 Hypothetical protein T05G11.1 [Caenorhabditis elegans] emb|CAA19434.1| Hypothetical protein T05G11.1 [Caenorhabditis elegans] ref|NP_506989.1| T05G11.1 [Caenorhabditis elegans] 2.0E-97
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 4.0E-22
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 5.0E-22
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 1.0E-21
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 3.0E-21
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 5.0E-21
Sequence
Target Sequence 
>C. ELEGANS:192021_AT
gatgattctgccgctggaagtcaattattttcagccaggctgtcttgcaaatcatgcgga
aaattcttctatagtgaaagatcattaagcaaacatcatcgtcagatccacatgtctgga
catgtgtgcgtcttgtgcaatcaccaaatgccgaagaccgtgacggttcaggagcacatg
gaaaaagagcataacatccgattggtcttcaactgtcggtgctgtaactggtcttttgcc
actagacgttgcttgatgtcccatgttgaatgtttgaagaaggctggagacgcgaggaac
gtgaaaccggtggccataccaagaatggctgccgattcgattctccaatctttgaaagag
agtgaagcccaagaatatcccgacttctcagcggcatctactacatcttcaggtccagca
tcaactctgaagactccgaggatggatttcaagaagaatttgaaaatctgtacagatgct
gtgcagatactcgttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATTCTGCCGCTGGAAGTCAAT 20 411 898 Antisense
GCCAGGCTGTCTTGCAAATCATGCG 255 281 931 Antisense
GTGTGCGTCTTGTGCAATCACCAAA 274 487 1021 Antisense
GTCTTCAACTGTCGGTGCTGTAACT 295 467 1102 Antisense
GCTGTAACTGGTCTTTTGCCACTAG 416 293 1118 Antisense
AGACGTTGCTTGATGTCCCATGTTG 126 69 1141 Antisense
GAGGAACGTGAAACCGGTGGCCATA 669 401 1191 Antisense
CCAAGAATATCCCGACTTCTCAGCG 147 277 1266 Antisense
ATCTACTACATCTTCAGGTCCAGCA 211 33 1293 Antisense
GGTCCAGCATCAACTCTGAAGACTC 397 499 1309 Antisense
GATGCTGTGCAGATACTCGTTGGAA 160 415 1372 Antisense
Sequence Source Affymetrix Proprietary Database