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[192020_at] protein-tyrosine phosphatase

Description Y57G11C.6 /REP_DB=WormBase Gene ID /WP=CE14936 /TR=O18232 /GB=CAB16508.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 96      4grp_total > 48      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 13.3
(-1.3)
A 		20.4
(0.1)
A 		35.2
(3)
M 		4.6
(-3)
A 		31
B 14.3
(-3)
A 		37.6
(2.5)
P 		30.6
(0.9)
A 		39.5
(3)
A 		25
C 34.7
(0.4)
A 		33.2
(-0.8)
P 		38
(3)
P 		30.4
(-3)
A 		8
avr 20.8
(-3) 		30.4
(1.2) 		34.6
(3) 		24.8
(-1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 6.9
(-3)
A 		18.4
(-1.9)
A 		11.7
(-2.6)
A 		51.4
(1.1)
A 		35.8
(-0.3)
P 		72.3
(3)
P 		65
B 39.3
(-0.4)
P 		40.9
(-0.3)
P 		3.4
(-3)
A 		59.2
(1)
P 		41.8
(-0.3)
P 		87.4
(3)
P 		84
C 21.5
(-2)
M 		28.7
(-1.3)
P 		12.5
(-3)
A 		29.6
(-1.2)
A 		64.6
(2.6)
P 		68.7
(3)
P 		56
avr 22.6
(-1.8) 		29.3
(-1.2) 		9.2
(-3) 		46.7
(0.4) 		47.4
(0.4) 		76.1
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.9
(-0)
A 		4.4
(-0.4)
A 		9.2
(3)
M 		0.7
(-3)
A 		9
B 4.6
(-3)
A 		9.3
(3)
P 		7.1
(0.2)
A 		8.4
(1.9)
A 		5
C 11.5
(1.7)
A 		9.5
(0.3)
P 		13.2
(3)
P 		5.1
(-3)
A 		8
avr 7
(-0.3) 		7.7
(0.5) 		9.8
(3) 		4.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.3
(-3)
A 		6.5
(-1.1)
A 		2.6
(-2.5)
A 		13
(1.3)
A 		10.8
(0.5)
P 		17.6
(3)
P 		16
B 13.7
(-0.6)
P 		13.6
(-0.6)
P 		0.8
(-3)
A 		15.7
(-0.2)
P 		17
(0.1)
P 		32.6
(3)
P 		32
C 8
(-1.5)
M 		8.8
(-1.3)
P 		3.2
(-3)
A 		6
(-2.2)
A 		20.9
(2.4)
P 		23
(3)
P 		20
avr 7.7
(-1.5) 		9.6
(-1) 		2.2
(-3) 		11.6
(-0.5) 		16.2
(0.8) 		24.4
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9839
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.6 NCBI
Target Description Y57G11C.6 /REP_DB=WormBase Gene ID /WP=CE14936 /TR=O18232 /GB=CAB16508.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070378 NCBI Caenorhabditis elegans Y57G11C.6 (Y57G11C.6) mRNA, complete cds. 11/11 None
SNAP00000003464 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14758381:14760858:-1 11/11 None
GENEFINDER00000003579 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14758381:14764571:-1 11/11 None
Y57G11C.6 ENSEMBL cdna:known chromosome:CEL140:IV:14758381:14760858:-1 gene:Y57G11C.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14758386-14760864(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl Y57G11C.6
Entrez Gene 190372 Entrez gene
SwissProt O18232 EMBL-EBI
WormBase CE14936 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16508 Hypothetical protein Y57G11C.6 [Caenorhabditis elegans] ref|NP_502779.1| Y57G11C.6 [Caenorhabditis elegans] 0.0
blast AAB88314 Hypothetical protein C24D10.1 [Caenorhabditis elegans] ref|NP_500733.2| C24D10.1 [Caenorhabditis elegans] 0.0
blast CAB16507 Hypothetical protein Y57G11C.5 [Caenorhabditis elegans] ref|NP_502780.2| Y57G11C.5 [Caenorhabditis elegans] 0.0
blast NP_490769 Y18H1A.1 [Caenorhabditis elegans] gb|AAK21505.1| Hypothetical protein Y18H1A.1 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.4E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.4E-27
Sequence
Target Sequence 
>C. ELEGANS:192020_AT
gttattgtcggagatgagcccattgaattcttcccgaaaaaggctgaagattacaagaat
tacggacagatgtggatcaataatcgaaaagtggaatatgtcagtgatgatgtgtttcgt
ttttcaattgaagttttaccacacggatgctccaattcgatcatctgcaatgtgacagtt
atcagtaattggaaagtggacagtgttcctgtaaaacaggcaattgccatcaaagaagct
tttggtctgaatagctacttgctcaaagcacccgccgacgacaatgcaatgatcaattca
caacatggagctggacgagctggatacttcttggcactggcagttgctgttcacacaatt
gatacaaaggttgccgaaccatgcattgtggatattgtcaaatcgattcgatcccagaga
ccaagagcagtcgattcattctgtcaatattgttccttgtacatttcattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTGTCGGAGATGAGCCCATTG 582 447 832 Antisense
GCCCATTGAATTCTTCCCGAAAAAG 496 281 849 Antisense
GTCAGTGATGATGTGTTTCGTTTTT 677 465 931 Antisense
CAATTGAAGTTTTACCACACGGATG 640 179 956 Antisense
GGATGCTCCAATTCGATCATCTGCA 656 511 976 Antisense
TTTTGGTCTGAATAGCTACTTGCTC 389 673 1071 Antisense
ATAGCTACTTGCTCAAAGCACCCGC 38 23 1082 Antisense
GATCAATTCACAACATGGAGCTGGA 658 421 1122 Antisense
GGTTGCCGAACCATGCATTGTGGAT 292 507 1200 Antisense
CAGTCGATTCATTCTGTCAATATTG 676 207 1259 Antisense
ATTGTTCCTTGTACATTTCATTGCT 526 5 1280 Antisense
Sequence Source Affymetrix Proprietary Database