[Home] | [Total List]

[192012_s_at]

Description T19D12.2 /REP_DB=WormBase Gene ID /WP=CE04977 /TR=Q22578 /GB=AAC24423.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. faecalis PHB depolymerase
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 82      6grp_total > 01      4grp_total > 04      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 356.4
(-1.5)
P 		217.8
(-3)
P 		229.4
(-2.9)
P 		756.2
(3)
P 		538
B 355.8
(-2.1)
P 		318.7
(-2.6)
P 		280
(-3)
P 		800.1
(3)
P 		520
C 471.9
(0.1)
P 		233.6
(-2.8)
P 		213.1
(-3)
P 		714.7
(3)
P 		502
avr 394.7
(-1.2) 		256.7
(-2.8) 		240.8
(-3) 		757
(3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 281.9
(-2.6)
P 		550.1
(3)
P 		367.8
(-0.8)
P 		273.4
(-2.8)
P 		263.1
(-3)
P 		340.3
(-1.4)
P 		287
B 312.5
(-1.1)
P 		365.3
(3)
P 		335.2
(0.7)
P 		287.9
(-3)
P 		318.5
(-0.6)
P 		328.4
(0.1)
P 		77
C 324.9
(-0.3)
P 		359.5
(0.6)
P 		379.2
(1.1)
P 		220.1
(-3)
P 		363.6
(0.7)
P 		455.1
(3)
P 		235
avr 306.4
(-1.3) 		425
(3) 		360.7
(0.7) 		260.5
(-3) 		315.1
(-1) 		374.6
(1.2) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 129.8
(3)
P 		47.3
(-3)
P 		60
(-2.1)
P 		110.7
(1.6)
P 		83
B 113.5
(-0.2)
P 		78.7
(-2.2)
P 		64.9
(-3)
P 		170.5
(3)
P 		106
C 156.2
(3)
P 		67.2
(-3)
P 		74.3
(-2.5)
P 		120.5
(0.6)
P 		89
avr 133.2
(2.9) 		64.4
(-3) 		66.4
(-2.8) 		133.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 52
(-3)
P 		195.6
(3)
P 		80.1
(-1.8)
P 		69.3
(-2.3)
P 		79.4
(-1.9)
P 		82.8
(-1.7)
P 		144
B 108.7
(0.7)
P 		121.6
(2.1)
P 		81.4
(-2.4)
P 		76.2
(-3)
P 		129.4
(3)
P 		122.4
(2.2)
P 		53
C 120.4
(1.2)
P 		109.7
(0.6)
P 		96.5
(-0.1)
P 		44.3
(-3)
P 		117.7
(1.1)
P 		152.4
(3)
P 		108
avr 93.7
(-0.7) 		142.3
(3) 		86
(-1.3) 		63.3
(-3) 		108.8
(0.5) 		119.2
(1.2) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5177
Sequence Type Exemplar sequence
Representative Public ID T19D12.2 NCBI
Target Description T19D12.2 /REP_DB=WormBase Gene ID /WP=CE04977 /TR=Q22578 /GB=AAC24423.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. faecalis PHB depolymerase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062955(11), NM_182240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062955 NCBI Caenorhabditis elegans T19D12.2a (T19D12.2) mRNA, complete cds. 11/11 None
NM_182240 NCBI Caenorhabditis elegans T19D12.2c (T19D12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003097 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6659997:6664948:1 11/11 None
T19D12.2a ENSEMBL cdna:known chromosome:CEL140:II:6661939:6665107:1 gene:T19D12.2 11/11 None
T19D12.2c.1 ENSEMBL cdna:known chromosome:CEL140:II:6661939:6665101:1 gene:T19D12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003088 1/11 Cross Hyb Matching Probes None
T19D12.2d.2 2/11 Cross Hyb Matching Probes None
T19D12.2d.1 2/11 Cross Hyb Matching Probes None
T19D12.2c.2 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174099 3 2 NM_062955 192012_s_at (11)
NM_182240 192012_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6661636-6664945(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19D12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38593 Hypothetical protein T19D12.2a [Caenorhabditis elegans] ref|NP_495356.3| T19D12.2a [Caenorhabditis elegans] 0.0
blast AAO38595 Hypothetical protein T19D12.2c [Caenorhabditis elegans] ref|NP_872040.1| T19D12.2c [Caenorhabditis elegans] 0.0
blast AAO38594 Hypothetical protein T19D12.2b [Caenorhabditis elegans] ref|NP_872039.1| T19D12.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192012_S_AT
gagcttgatagatcttcagagcaatgttgatactctttacattaacgcattttcaatgag
ggatgcaacaatttcagatggcctcgtgtggctgatcaataactacccatatggaataaa
cactattatcattgtcgtcggatatcatgatgatgaaaaccccgcaacgactacattcat
tcttgaaactctcagagctcagggatataaagttataacggtagctgctggtgtagggca
tggagatttatctggaattgctgacaaaccagaatggtatttccaagtcaatgactcaaa
tggacaaactattgctgatgcgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTGATAGATCTTCAGAGCAAT 314 389 1341 Antisense
GATACTCTTTACATTAACGCATTTT 3 425 1369 Antisense
TGCAACAATTTCAGATGGCCTCGTG 288 575 1404 Antisense
GATGGCCTCGTGTGGCTGATCAATA 246 407 1417 Antisense
GGCTGATCAATAACTACCCATATGG 143 541 1430 Antisense
AACACTATTATCATTGTCGTCGGAT 685 135 1459 Antisense
ATTGTCGTCGGATATCATGATGATG 203 3 1471 Antisense
CCCGCAACGACTACATTCATTCTTG 319 261 1501 Antisense
TTCATTCTTGAAACTCTCAGAGCTC 558 689 1516 Antisense
ATGGTATTTCCAAGTCAATGACTCA 395 51 1614 Antisense
GACAAACTATTGCTGATGCGATTTC 198 363 1643 Antisense
Sequence Source Affymetrix Proprietary Database