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[192008_s_at] sodium/phosphate trasnsprter

Description T19D12.9 /REP_DB=WormBase Gene ID /WP=CE18262 /TR=O76837 /GB=AAC24431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate trasnsprter
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 54      6grp_total > 31      4grp_total > 50      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 176.4
(-1.8)
P 		252.9
(3)
P 		240.2
(2.2)
M 		156.8
(-3)
P 		96
B 189.2
(-3)
P 		266.4
(3)
P 		243.1
(1.2)
P 		221.4
(-0.5)
P 		77
C 225.5
(0.2)
P 		291.8
(3)
P 		289.8
(2.9)
P 		150.2
(-3)
P 		142
avr 197
(-1.7) 		270.4
(3) 		257.7
(2.2) 		176.1
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 280.1
(0.6)
P 		288.8
(0.8)
P 		372.5
(3)
P 		262.6
(0.1)
P 		245.3
(-0.3)
P 		143.9
(-3)
A 		229
B 266.4
(0.2)
P 		342
(3)
P 		270
(0.4)
P 		311.9
(1.9)
P 		250.9
(-0.3)
P 		177.9
(-3)
P 		164
C 223.5
(-0.5)
P 		343
(3)
P 		335.7
(2.8)
P 		243.4
(0.1)
P 		200.7
(-1.1)
P 		136.6
(-3)
P 		206
avr 256.7
(0.6) 		324.6
(2.9) 		326.1
(3) 		272.6
(1.1) 		232.3
(-0.2) 		152.8
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 64.2
(3)
P 		54.9
(1.6)
P 		62.8
(2.8)
M 		22.9
(-3)
P 		41
B 60.3
(1.2)
P 		65.8
(3)
P 		56.3
(-0.1)
P 		47.2
(-3)
P 		19
C 74.6
(0.9)
P 		83.9
(1.6)
P 		101
(3)
P 		25.3
(-3)
P 		76
avr 66.4
(2) 		68.2
(2.3) 		73.4
(3) 		31.8
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 51.6
(-1.5)
P 		102.7
(3)
P 		81.1
(1.1)
P 		66.6
(-0.2)
P 		74
(0.5)
P 		35
(-3)
A 		68
B 92.7
(0.4)
P 		113.8
(3)
P 		65.6
(-3)
P 		82.6
(-0.9)
P 		101.9
(1.5)
P 		66.3
(-2.9)
P 		48
C 82.8
(0.8)
P 		104.7
(3)
P 		85.4
(1)
P 		48.9
(-2.7)
P 		64.9
(-1)
P 		45.7
(-3)
P 		59
avr 75.7
(-0.2) 		107.1
(3) 		77.4
(-0.1) 		66
(-1.2) 		80.3
(0.2) 		49
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192008_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4227
Sequence Type Exemplar sequence
Representative Public ID T19D12.9 NCBI
Target Description T19D12.9 /REP_DB=WormBase Gene ID /WP=CE18262 /TR=O76837 /GB=AAC24431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate trasnsprter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062952 NCBI Caenorhabditis elegans T19D12.9 (T19D12.9) mRNA, complete cds. 11/11 None
SNAP00000003086 ENSEMBL cdna:SNAP chromosome:CEL140:II:6652355:6654292:-1 11/11 None
GENEFINDER00000003092 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6649732:6654292:-1 11/11 None
T19D12.9 ENSEMBL cdna:known chromosome:CEL140:II:6652290:6654327:-1 gene:T19D12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6652351-6654289(-) 99.5 100.0
Public Domain and Genome References
Gene Title sodium/phosphate trasnsprter
Ensembl T19D12.9
Entrez Gene 174098 Entrez gene
SwissProt O76837 EMBL-EBI
WormBase CE18262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24431 Hypothetical protein T19D12.9 [Caenorhabditis elegans] ref|NP_495353.1| T19D12.9 [Caenorhabditis elegans] 0.0
blast CAE56160 Hypothetical protein CBG23780 [Caenorhabditis briggsae] 0.0
blast AAC24432 Serpentine receptor, class a (alpha) protein 26 [Caenorhabditis elegans] ref|NP_495352.1| Serpentine Receptor, class A (alpha) family member (sra-26) [Caenorhabditis elegans] 1.0E-175
blast AAC24430 Hypothetical protein T19D12.10 [Caenorhabditis elegans] ref|NP_495354.1| T19D12.10 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495353.1 12 20-42,71-93,100-122,127-149,161-183,193-212,253-275,290-312,325-344,349-370,383-405,415-437
T19D12.9 12 20-42,71-93,100-122,127-149,161-183,193-212,253-275,290-312,325-344,349-370,383-405,415-437
SNAP00000003086 12 20-42,71-93,100-122,127-149,161-183,193-212,253-275,290-312,325-344,349-370,383-405,415-437
GENEFINDER00000003092 18 20-42,71-93,100-122,127-149,161-183,193-212,253-275,290-312,325-344,349-370,383-405,415-437,497-516,580-597,617-639,668-686,714-736,749-771
Sequence
Target Sequence 
>C. ELEGANS:192008_S_AT
ccatatatgcttgcgactgctgtcaaattcgtggcaggaccgctatctgaccacatgaca
tttattccggagacatggagaatgattttctttgctgcactttcccaattaggattggct
attggatttttcgttatggcgttgacaaattcaaaattaattgcacaaatcgcctacaca
gctgctattgtcctcgcagggatcaatattgtaggagtggttaaatgcgctcaaatggtt
gcccgtcaacatgtacattttgtgatggcagttatctctttgagcgcctggggagccatt
tttcttcttcccatcataattggttttgtgtgtccaaaccatacagcgtcagaatgggca
gttttttatactgctgttggaatatgggttattataatgaatgtaccatttccatttttc
gcaactatggatgccgcggagtacacgaaacctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATATATGCTTGCGACTGCTGTCA 709 269 901 Antisense
CAAATTCGTGGCAGGACCGCTATCT 208 193 924 Antisense
CCGCTATCTGACCACATGACATTTA 216 261 940 Antisense
TTTGCTGCACTTTCCCAATTAGGAT 586 667 991 Antisense
TGCTATTGTCCTCGCAGGGATCAAT 496 579 1083 Antisense
GTTGCCCGTCAACATGTACATTTTG 63 439 1138 Antisense
ATGGCAGTTATCTCTTTGAGCGCCT 122 53 1165 Antisense
TTTTCTTCTTCCCATCATAATTGGT 223 677 1200 Antisense
TGTGTGTCCAAACCATACAGCGTCA 416 555 1227 Antisense
ACCATTTCCATTTTTCGCAACTATG 703 85 1305 Antisense
ATGCCGCGGAGTACACGAAACCTGA 119 39 1331 Antisense
Sequence Source Affymetrix Proprietary Database