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[192007_at] Yeast protein YD8419.03c like

Description R10H10.6 /REP_DB=WormBase Gene ID /WP=CE06297 /TR=Q21918 /GB=CAA94613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast protein YD8419.03c like
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 240.7
(-1.2)
P 		309.8
(3)
P 		263.1
(0.2)
P 		210.2
(-3)
P 		100
B 204.4
(-3)
P 		332.2
(3)
P 		219.2
(-2.3)
P 		203.9
(-3)
P 		128
C 269.1
(1.6)
P 		287
(3)
P 		271.2
(1.8)
P 		208.4
(-3)
P 		79
avr 238.1
(-1.2) 		309.7
(3) 		251.2
(-0.4) 		207.5
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 288.3
(-0.1)
P 		316.4
(0.8)
P 		386.8
(3)
P 		358.6
(2.1)
P 		235.7
(-1.8)
P 		196
(-3)
P 		191
B 288.7
(-0.3)
P 		369.3
(3)
P 		322.6
(1.1)
P 		291.4
(-0.2)
P 		257.8
(-1.5)
P 		221
(-3)
P 		148
C 304.9
(0.6)
P 		348.9
(2.2)
P 		292.1
(0.2)
P 		371
(3)
P 		232.6
(-2)
P 		203.4
(-3)
P 		168
avr 294
(0.8) 		344.9
(3) 		333.8
(2.5) 		340.3
(2.8) 		242
(-1.5) 		206.8
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 87.7
(3)
P 		67.3
(0.8)
P 		68.8
(1)
P 		30.8
(-3)
P 		57
B 65.2
(0.4)
P 		82.1
(3)
P 		50.8
(-1.9)
P 		43.5
(-3)
P 		39
C 89.1
(2.5)
P 		82.5
(1.8)
P 		94.5
(3)
P 		35.1
(-3)
P 		59
avr 80.7
(3) 		77.3
(2.5) 		71.4
(1.7) 		36.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 53.1
(-2.5)
P 		112.5
(3)
P 		84.2
(0.4)
P 		91
(1)
P 		71.1
(-0.8)
P 		47.7
(-3)
P 		65
B 100.4
(0)
P 		122.9
(3)
P 		78.3
(-2.9)
P 		77.2
(-3)
P 		104.7
(0.6)
P 		82.4
(-2.3)
P 		46
C 113
(3)
P 		106.5
(2.1)
P 		74.3
(-2.2)
P 		74.6
(-2.1)
P 		75.3
(-2)
P 		68.1
(-3)
P 		45
avr 88.8
(-0.2) 		114
(3) 		78.9
(-1.4) 		80.9
(-1.1) 		83.7
(-0.8) 		66.1
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8654
Sequence Type Exemplar sequence
Representative Public ID R10H10.6 NCBI
Target Description R10H10.6 /REP_DB=WormBase Gene ID /WP=CE06297 /TR=Q21918 /GB=CAA94613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast protein YD8419.03c like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069521 NCBI Caenorhabditis elegans R10H10.6 (R10H10.6) mRNA, complete cds. 11/11 None
SNAP00000020335 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10408814:10413901:-1 11/11 None
GENEFINDER00000020343 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10408814:10409449:-1 11/11 None
R10H10.6 ENSEMBL cdna:known chromosome:CEL140:IV:10408814:10409449:-1 gene:R10H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10408819-10409455(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast protein YD8419.03c like
Ensembl R10H10.6
Entrez Gene 187789 Entrez gene
SwissProt Q21918 EMBL-EBI
WormBase CE06297 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18348_AT riboflavin kinase/FAD synthetase family protein at
ATH1-121501:254417_AT riboflavin kinase/FAD synthetase family protein at
CHICKEN:GGA.19295.1.S1_AT similar to RIKEN cDNA 0610038L10 gene gga
MU11KSUBA:AF031381_S_AT riboflavin kinase mm
MG-U74AV2:97103_AT riboflavin kinase mm
MG-U74AV2:97104_G_AT riboflavin kinase mm
MG-U74AV2:101050_AT riboflavin kinase mm
MG-U74BV2:162527_S_AT riboflavin kinase mm
MOE430A:1416229_AT riboflavin kinase mm
MOUSE430A_2:1416229_AT riboflavin kinase mm
MOUSE430_2:1416229_AT riboflavin kinase mm
MOE430A:1416230_AT riboflavin kinase mm
MOUSE430A_2:1416230_AT riboflavin kinase mm
MOUSE430_2:1416230_AT riboflavin kinase mm
MOE430A:1415737_AT riboflavin kinase mm
MOE430B:1415737_AT riboflavin kinase mm
MOUSE430A_2:1415737_AT riboflavin kinase mm
MOUSE430_2:1415737_AT riboflavin kinase mm
MU19KSUBA:TC19347_AT Riboflavin kinase (Rfk), mRNA mm
MU19KSUBB:TC31435_AT Riboflavin kinase (Rfk), mRNA mm
RAT230_2:1372671_AT similar to riboflavin kinase rn
RAE230A:1372671_AT similar to riboflavin kinase rn
RG-U34B:RC_AA849030_AT similar to riboflavin kinase rn
RG-U34C:RC_AI237193_AT similar to riboflavin kinase rn
RG-U34C:RC_AI180421_AT similar to riboflavin kinase rn
RAE230B:1382331_AT similar to riboflavin kinase rn
RAT230_2:1382331_AT similar to riboflavin kinase rn
YEAST_2:1772920_AT Riboflavin kinase, phosphorylates riboflavin to form riboflavin monophosphate (FMN), which is a necessary cofactor for many enzymes; localizes to microsomes and to the mitochondrial inner membrane Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9231 riboflavin biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8531 riboflavin kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94614 Hypothetical protein R10H10.7 [Caenorhabditis elegans] ref|NP_501923.2| R10H10.7 [Caenorhabditis elegans] 0.0
blast CAE63824 Hypothetical protein CBG08375 [Caenorhabditis briggsae] 1.0E-175
blast CAA94613 Hypothetical protein R10H10.6 [Caenorhabditis elegans] ref|NP_501922.1| R10H10.6 [Caenorhabditis elegans] 2.0E-63
blast CAA94613 Hypothetical protein R10H10.6 [Caenorhabditis elegans] ref|NP_501922.1| R10H10.6 [Caenorhabditis elegans] 5.0E-62
blast CAE63825 Hypothetical protein CBG08376 [Caenorhabditis briggsae] 1.0E-47
blast XP_624516 PREDICTED: similar to riboflavin kinase [Apis mellifera] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002606 EMBL-EBI Riboflavin kinase / FAD synthetase 3.2E-60
Pfam IPR002606 EMBL-EBI Riboflavin kinase / FAD synthetase 3.2E-60
Sequence
Target Sequence 
>C. ELEGANS:192007_AT
gaatctgttaccctaccaattcgtaggagaggtagttcgtggctttggtcgtggtggcaa
agaacttggatgtcccactgcgaacatggatggcactgtagtgaatggtcttcccgaagg
tcttcccgttggtgtctactttggaactgcaaaactcgacggaaaatcgtataaaatggc
aatgagcattggatggaatccacaatatcagaatgagaagaagactgttgaattacatct
gattgattattcgggtagtgatttttatgggaaaacactcagtgcagttataatcggatt
cattcgtgaaatgaaaagctttgaatcactagacgaactaaaatctgcaatcgccatgga
catca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTGTTACCCTACCAATTCGTA 418 325 15 Antisense
GGAGAGGTAGTTCGTGGCTTTGGTC 50 519 40 Antisense
GTGGCTTTGGTCGTGGTGGCAAAGA 465 491 53 Antisense
AAAGAACTTGGATGTCCCACTGCGA 602 121 73 Antisense
GTCCCACTGCGAACATGGATGGCAC 544 475 86 Antisense
GGCACTGTAGTGAATGGTCTTCCCG 635 535 106 Antisense
TGAATGGTCTTCCCGAAGGTCTTCC 30 573 116 Antisense
TCCCGTTGGTGTCTACTTTGGAACT 173 597 138 Antisense
ACTCAGTGCAGTTATAATCGGATTC 151 101 291 Antisense
AGCTTTGAATCACTAGACGAACTAA 457 77 331 Antisense
AAATCTGCAATCGCCATGGACATCA 510 117 355 Antisense
Sequence Source Affymetrix Proprietary Database