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[192002_at] zinc finger protein

Description AH6.5 /REP_DB=WormBase Gene ID /WP=CE26846 /GEN=mex-6 /TR=SW:Q09436 /GB=CAA88088.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 88      4grp_total > 0      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 20.3
(-3)
A 		34.9
(-1.5)
A 		58.3
(0.8)
A 		79.6
(3)
A 		59
B 35.3
(-3)
A 		43.8
(-1.2)
A 		35.2
(-3)
A 		63.1
(3)
A 		28
C 51.8
(3)
A 		18.2
(-1.2)
A 		40.1
(1.5)
A 		4.1
(-3)
A 		48
avr 35.8
(-1.7) 		32.3
(-3) 		44.5
(1.4) 		48.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 945
1 2 3 4 5 6 range
A 44.6
(-2.9)
A 		50.8
(-2.9)
A 		31.7
(-3)
A 		71.6
(-2.7)
P 		548
(0.6)
P 		902.8
(3)
P 		871
B 43.1
(-3)
A 		43.6
(-3)
A 		54
(-2.9)
A 		76
(-2.8)
P 		579.4
(0.5)
P 		957.2
(3)
P 		914
C 51.6
(-2.7)
A 		47.1
(-2.8)
P 		12.7
(-3)
A 		86.9
(-2.5)
P 		538.2
(0.6)
P 		896.5
(3)
P 		884
avr 46.4
(-2.9) 		47.2
(-2.9) 		32.8
(-3) 		78.2
(-2.7) 		555.2
(0.5) 		918.8
(3) 		886
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.4
(-3)
A 		7.6
(-2.8)
A 		15.2
(3)
A 		11.7
(0.3)
A 		8
B 11.3
(0.6)
A 		10.8
(0)
A 		8.2
(-3)
A 		13.4
(3)
A 		5
C 17.1
(3)
A 		5.2
(-1.4)
A 		14
(1.9)
A 		0.7
(-3)
A 		16
avr 11.9
(2.2) 		7.9
(-3) 		12.5
(3) 		8.6
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 8.2
(-3)
A 		18.1
(-2.7)
A 		6.9
(-3)
A 		18.2
(-2.7)
P 		165.4
(1.5)
P 		219.8
(3)
P 		213
B 15
(-3)
A 		14.5
(-3)
A 		13.1
(-3)
A 		20.1
(-2.9)
P 		235.4
(0.9)
P 		356.9
(3)
P 		344
C 19.1
(-2.7)
A 		14.4
(-2.8)
P 		3.2
(-3)
A 		17.5
(-2.7)
P 		174.2
(0.5)
P 		300.1
(3)
P 		297
avr 14.1
(-2.9) 		15.7
(-2.8) 		7.7
(-3) 		18.6
(-2.8) 		191.7
(0.9) 		292.3
(3) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3305
Sequence Type Exemplar sequence
Representative Public ID AH6.5 NCBI
Target Description AH6.5 /REP_DB=WormBase Gene ID /WP=CE26846 /GEN=mex-6 /TR=SW:Q09436 /GB=CAA88088.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063642 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-6) (mex-6) mRNA, complete cds. 11/11 None
SNAP00000033433 ENSEMBL cdna:SNAP chromosome:CEL140:II:9524092:9525786:1 11/11 None
GENEFINDER00000033447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9524092:9525786:1 11/11 None
AH6.5 ENSEMBL cdna:known chromosome:CEL140:II:9524085:9526273:1 gene:AH6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9523998-9525783(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol mex-6
Ensembl AH6.5
Entrez Gene 174504 Entrez gene
SwissProt Q09436 EMBL-EBI
WormBase CE26846 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88088 Hypothetical protein AH6.5 [Caenorhabditis elegans] ref|NP_496043.1| Muscle EXcess family member (mex-6) [Caenorhabditis elegans] sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 0.0
blast T18624 hypothetical protein AH6.5 - Caenorhabditis elegans 0.0
blast CAB05310 Hypothetical protein W02A2.7 [Caenorhabditis elegans] ref|NP_502566.1| Muscle EXcess family member (mex-5) [Caenorhabditis elegans] sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.9E-8
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.9E-11
Sequence
Target Sequence 
>C. ELEGANS:192002_AT
tctttgcatgacgcacgcagctggaattaatccttgtgcattgggtgctcggtgcaagtt
tgctcatgggctcaaagagctcagagcttctgatattccgactcgttatccgaacaataa
atacaaaactaaattgtgcaagaattttgcgcgtggaggatctggagtttgcccatatgg
gcttcgatgcgagtttgttcacccatcggatacggaattccagaatattcctccatatca
acgtaagatggtcgaggaacacgattctattccggaagattacgttgtagctagatatca
gccacgattcatgcataccagtggaaaggctacgactccaacgaaggtcaccctcaagca
acgaaatgtggctggttccatgatgtgcctctccaatactggacgcgatttagaggcagg
aggtgatttcaaccatccggaaatcaatgaaaacgatttaccaccacacttgagacggat
tcgcagaggcaatccacctgtaaccagaagtcgtccatctttcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTGCATGACGCACGCAGCTGGA 397 615 933 Antisense
AGAGCTTCTGATATTCCGACTCGTT 609 69 1015 Antisense
GAATTTTGCGCGTGGAGGATCTGGA 153 325 1074 Antisense
GGATCTGGAGTTTGCCCATATGGGC 318 511 1090 Antisense
GGCTTCGATGCGAGTTTGTTCACCC 367 537 1112 Antisense
GGCTACGACTCCAACGAAGGTCACC 115 537 1260 Antisense
AGGTCACCCTCAAGCAACGAAATGT 332 57 1277 Antisense
TGGCTGGTTCCATGATGTGCCTCTC 706 543 1301 Antisense
GAAAACGATTTACCACCACACTTGA 638 353 1381 Antisense
TCGCAGAGGCAATCCACCTGTAACC 224 599 1413 Antisense
AACCAGAAGTCGTCCATCTTTCAGT 400 147 1434 Antisense
Sequence Source Affymetrix Proprietary Database