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[192001_at] corticosteroid-binding protein

Description T08D10.2 /REP_DB=WormBase Gene ID /WP=CE03643 /TR=Q22343 /GB=CAA90637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=corticosteroid-binding protein
Cluster 6grp_high1_10_10 > 57      6grp_total > 56      4grp_total > 14      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 223.1
(-0.1)
P 		180.7
(-3)
A 		214.8
(-0.7)
M 		268.3
(3)
A 		88
B 227.6
(3)
P 		193.7
(-0.3)
M 		165.1
(-3)
M 		197.4
(0.1)
M 		63
C 236.1
(0.4)
P 		207.6
(-1.3)
M 		177.4
(-3)
A 		281.4
(3)
P 		104
avr 228.9
(1.1) 		194
(-2.2) 		185.8
(-3) 		249
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 253.9
(-0.7)
P 		235.5
(-1.2)
P 		188.2
(-2.4)
P 		165.3
(-3)
A 		224.1
(-1.5)
P 		400.3
(3)
P 		235
B 235.3
(-1.2)
P 		236.8
(-1.1)
P 		224.5
(-1.6)
P 		200.6
(-2.5)
P 		185.6
(-3)
P 		351.2
(3)
P 		166
C 185.7
(-1.9)
M 		294.3
(2.1)
P 		189.4
(-1.8)
P 		187.5
(-1.8)
M 		156.1
(-3)
P 		319.7
(3)
P 		164
avr 225
(-1.6) 		255.5
(-0.5) 		200.7
(-2.4) 		184.5
(-3) 		188.6
(-2.9) 		357.1
(3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 81.2
(3)
P 		39.2
(-3)
A 		56.2
(-0.6)
M 		39.3
(-3)
A 		42
B 72.6
(3)
P 		47.8
(-1.3)
M 		38.3
(-3)
M 		42.1
(-2.3)
M 		34
C 78.1
(3)
P 		59.7
(-0.6)
M 		61.8
(-0.2)
A 		47.5
(-3)
P 		31
avr 77.3
(3) 		48.9
(-2) 		52.1
(-1.4) 		43
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 46.8
(-2.4)
P 		83.8
(1.5)
P 		41
(-3)
P 		41.9
(-2.9)
A 		67.6
(-0.2)
P 		97.5
(3)
P 		57
B 81.9
(-0.8)
P 		78.8
(-1)
P 		54.5
(-2.9)
P 		53.1
(-3)
P 		75.4
(-1.3)
P 		131
(3)
P 		78
C 68.8
(-0.3)
M 		89.8
(1.5)
P 		48.2
(-2.1)
P 		37.7
(-3)
M 		50.5
(-1.9)
P 		107
(3)
P 		69
avr 65.8
(-1.1) 		84.1
(0.5) 		47.9
(-2.7) 		44.2
(-3) 		64.5
(-1.2) 		111.8
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16781
Sequence Type Exemplar sequence
Representative Public ID T08D10.2 NCBI
Target Description T08D10.2 /REP_DB=WormBase Gene ID /WP=CE03643 /TR=Q22343 /GB=CAA90637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=corticosteroid-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077599 NCBI Caenorhabditis elegans T08D10.2 (T08D10.2) mRNA, complete cds. 11/11 None
SNAP00000039806 ENSEMBL cdna:SNAP chromosome:CEL140:X:11948774:11951627:1 10/11 None
GENEFINDER00000039811 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11948774:11951627:1 11/11 None
T08D10.2 ENSEMBL cdna:known chromosome:CEL140:X:11948773:11951814:1 gene:T08D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11947188-11951627(+) 100.0 100.0
Public Domain and Genome References
Gene Title corticosteroid-binding protein
Ensembl T08D10.2
Entrez Gene 181369 Entrez gene
SwissProt Q22343 EMBL-EBI
WormBase CE33174 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90637 Hypothetical protein T08D10.2 [Caenorhabditis elegans] ref|NP_510000.2| T08D10.2 [Caenorhabditis elegans] 0.0
blast CAA21604 Hypothetical protein Y40B1B.6 [Caenorhabditis elegans] ref|NP_493366.1| Suppressor of PResenilin defect family member (spr-5) [Caenorhabditis elegans] sp|Q9XWP6|SPR5_CAEEL Suppressor of presenilin 5 (P110b homolog) gb|AAN62580.1| suppressor of presenilin 5; Y40B1B.6 [Caenorhabditis elegans] 1.0E-146
blast CAE63535 Hypothetical protein CBG08015 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR007526 EMBL-EBI SWIRM 4.2E-25
Pfam IPR002937 EMBL-EBI Amine oxidase 1.1E-93
Pfam IPR002937 EMBL-EBI Amine oxidase 7.7E-38
Pfam IPR002937 EMBL-EBI Amine oxidase 7.4E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510000.2 2 141-163,176-198
T08D10.2 2 141-163,176-198
SNAP00000039806 2 141-163,176-198
GENEFINDER00000039811 2 141-163,176-198
Sequence
Target Sequence 
>C. ELEGANS:192001_AT
accagtttgctatagttcccgacaaaatatctgaacgagccgctatgttcacgtggtctt
cattacccgagtccagaactctcactactcactatgtcggagagaatcggtttcacgata
ctcccgtcacggaacttatcaccaaagcgttggaaatgctgaagacggttttcaaagatt
gtcctagtcctattgatgcatacgtcaccaactggcacaccgacgaattagcatttggca
caggaactttcatgtctttgagaaccgaaccccaacactttgacgccttgaaagaaccgc
tgaaaacacgagatggaaaaccgcgggtattttttgctggtgagcacactagcgcattgg
aacatggaacattggatggtgcattcaattcgggtcttcgcgctgccgctgacttggcga
acacttgtatcgaaattccatttatcaaccgttcaagggatctcatttttccaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGTTTGCTATAGTTCCCGACAA 205 87 1913 Antisense
ATTACCCGAGTCCAGAACTCTCACT 438 11 1974 Antisense
ACTCTCACTACTCACTATGTCGGAG 709 99 1990 Antisense
AGAATCGGTTTCACGATACTCCCGT 411 75 2015 Antisense
TCCCGTCACGGAACTTATCACCAAA 528 597 2034 Antisense
GATTGTCCTAGTCCTATTGATGCAT 139 435 2089 Antisense
TGATGCATACGTCACCAACTGGCAC 234 567 2106 Antisense
TGTCTTTGAGAACCGAACCCCAACA 24 555 2165 Antisense
GTGAGCACACTAGCGCATTGGAACA 604 483 2252 Antisense
GCCGCTGACTTGGCGAACACTTGTA 312 285 2317 Antisense
TCAAGGGATCTCATTTTTCCACCGT 688 629 2365 Antisense
Sequence Source Affymetrix Proprietary Database