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[191999_s_at] Erythrocyte band 7 intergral membrane protein

Description K03E6.5 /REP_DB=WormBase Gene ID /WP=CE07331 /GEN=unc-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 intergral membrane protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 11      6grp_total > 04      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1310
1 2 3 4 range
A 2418.1
(3)
P 		1576.2
(-1.5)
P 		1285.9
(-3)
P 		1356.5
(-2.6)
P 		1132
B 2419.2
(3)
P 		1816.4
(0.1)
P 		1192.6
(-3)
P 		1333.9
(-2.3)
P 		1227
C 2307.6
(3)
P 		1929.1
(1.1)
P 		1109.4
(-3)
P 		1255.7
(-2.3)
P 		1198
avr 2381.6
(3) 		1773.9
(-0.1) 		1196
(-3) 		1315.4
(-2.4) 		1186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1861
1 2 3 4 5 6 range
A 2679.6
(3)
P 		2204.6
(1.4)
P 		1562
(-0.9)
P 		1597.7
(-0.8)
P 		1365.8
(-1.6)
P 		952.3
(-3)
P 		1727
B 2622
(3)
P 		2165.7
(1.4)
P 		1601.4
(-0.6)
P 		1482.4
(-1)
P 		1305.6
(-1.6)
P 		900.3
(-3)
P 		1722
C 2482.3
(3)
P 		2233
(2.1)
P 		1804.5
(0.6)
P 		1704.1
(0.2)
P 		1333.5
(-1.1)
P 		819.1
(-3)
P 		1663
avr 2594.6
(3) 		2201.1
(1.6) 		1656
(-0.3) 		1594.7
(-0.5) 		1335
(-1.4) 		890.6
(-3) 		1704
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 682
1 2 3 4 range
A 880.4
(3)
P 		342.2
(-1.7)
P 		336.2
(-1.8)
P 		198.6
(-3)
P 		682
B 771.5
(3)
P 		448.6
(-0.9)
P 		276.4
(-3)
P 		284.3
(-2.9)
P 		495
C 763.9
(3)
P 		554.6
(0.7)
P 		386.7
(-1.1)
P 		211.7
(-3)
P 		552
avr 805.3
(3) 		448.5
(-0.7) 		333.1
(-1.9) 		231.5
(-3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 688
1 2 3 4 5 6 range
A 494
(-0.2)
P 		784
(3)
P 		340.2
(-1.8)
P 		405.2
(-1.1)
P 		412.1
(-1)
P 		231.9
(-3)
P 		552
B 912.3
(3)
P 		720.9
(1)
P 		388.9
(-2.4)
P 		392.6
(-2.4)
P 		530.4
(-1)
P 		335.7
(-3)
P 		577
C 920.1
(3)
P 		681.4
(0.8)
P 		459.3
(-1.3)
P 		342.7
(-2.4)
P 		431.5
(-1.5)
P 		274.2
(-3)
P 		646
avr 775.5
(3) 		728.8
(2.4) 		396.1
(-1.6) 		380.2
(-1.8) 		458
(-0.8) 		280.6
(-3) 		495
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18590
Sequence Type Exemplar sequence
Representative Public ID K03E6.5 NCBI
Target Description K03E6.5 /REP_DB=WormBase Gene ID /WP=CE07331 /GEN=unc-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 intergral membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075801 NCBI Caenorhabditis elegans UNCoordinated family member (unc-1) (unc-1) mRNA, complete cds. 11/11 None
SNAP00000010589 ENSEMBL cdna:SNAP chromosome:CEL140:X:1057828:1060681:-1 11/11 None
GENEFINDER00000010600 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1057828:1064443:-1 11/11 None
K03E6.5 ENSEMBL cdna:known chromosome:CEL140:X:1057548:1062444:-1 gene:K03E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1057827-1061885(-) 98.35 100.0
Public Domain and Genome References
Gene Title Erythrocyte band 7 intergral membrane protein
Gene Symbol unc-1
Ensembl K03E6.5
Entrez Gene 180458 Entrez gene
SwissProt Q21190 EMBL-EBI
WormBase CE28585 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69044 Uncoordinated protein 1 [Caenorhabditis elegans] ref|NP_508202.1| UNCoordinated family member (unc-1) [Caenorhabditis elegans] sp|Q21190|UNC1_CAEEL Uncoordinated protein 1 (Protein unc-1) 1.0E-145
blast CAE63577 Hypothetical protein CBG08066 [Caenorhabditis briggsae] 1.0E-144
blast T34324 erythrocyte band 7 intergral membrane protein homolog unc-1 - Caenorhabditis elegans 1.0E-134
blast AAC69044 Uncoordinated protein 1 [Caenorhabditis elegans] ref|NP_508202.1| UNCoordinated family member (unc-1) [Caenorhabditis elegans] sp|Q21190|UNC1_CAEEL Uncoordinated protein 1 (Protein unc-1) 1.0E-130
blast T34324 erythrocyte band 7 intergral membrane protein homolog unc-1 - Caenorhabditis elegans 1.0E-130
blast CAE63577 Hypothetical protein CBG08066 [Caenorhabditis briggsae] 1.0E-129
blast CAE63577 Hypothetical protein CBG08066 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 4.7E-77
Pfam IPR001107 EMBL-EBI Band 7 protein 4.1E-74
Pfam IPR001107 EMBL-EBI Band 7 protein 4.7E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508202.1 2 29-51,64-86
K03E6.5 2 29-51,64-86
SNAP00000010589 1 21-43
GENEFINDER00000010600 4 78-100,121-143,158-180,189-211
Sequence
Target Sequence 
>C. ELEGANS:191999_S_AT
tgatcttcatcattccctgtattgatacttatcgaaaaattgatcttcgtgttgtctcgt
acgcagttccaccgcaggaaatcctgtcaaaagactctgtgactgtatccgtcgacgccg
ttgtctacttccgtacctccgacccgattgcttccgtcaacaatgttgacgatgccattt
actccaccaaactgctagcgcaaactacgctgagaaacgctttgggtatgaaaactttga
ctgaaatgctcacagaacgtgaagccattgctcaactttgcgagaccattcttgatgaag
gaactgaacattggggagttaaggtagaacgtgtggaagtgaaggacatccgtctccccc
aacaactcacacgtgccatggccgccgaagccgaggccgcgcgtgaagctcgagccaaag
ttgtcgccgccgagggagagcagaaggcgtcacgggctctcaaagaagcggccgatgtca
ttcaagcgaacccagttgctcttcagcttcgtcacttgcaagcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCTTCATCATTCCCTGTATTGA 385 565 248 Antisense
GCAGTTCCACCGCAGGAAATCCTGT 253 313 310 Antisense
AAGACTCTGTGACTGTATCCGTCGA 666 153 338 Antisense
ACCCGATTGCTTCCGTCAACAATGT 516 89 389 Antisense
TGTTGACGATGCCATTTACTCCACC 502 563 411 Antisense
GTGAAGCCATTGCTCAACTTTGCGA 48 483 506 Antisense
AAGCTCGAGCCAAAGTTGTCGCCGC 611 149 653 Antisense
TTGTCGCCGCCGAGGGAGAGCAGAA 632 701 668 Antisense
AGCGGCCGATGTCATTCAAGCGAAC 367 79 714 Antisense
TTCAAGCGAACCCAGTTGCTCTTCA 230 685 728 Antisense
TCAGCTTCGTCACTTGCAAGCACTC 208 625 750 Antisense
Sequence Source Affymetrix Proprietary Database