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[191997_s_at] BRCA1 C Terminus (BRCT) domain

Description W04A8.1 /REP_DB=WormBase Gene ID /WP=CE16535 /TR=Q9XUM4 /GB=CAB04902.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BRCA1 C Terminus (BRCT) domain
Cluster 6grp_total > 87      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 10.6
(-3)
A 		157.4
(2.5)
P 		89.5
(-0.1)
A 		171.1
(3)
P 		161
B 76.5
(-1.4)
A 		165.4
(3)
P 		145.8
(2)
A 		45.4
(-3)
A 		120
C 80.2
(-3)
A 		132.7
(-1.2)
A 		115.5
(-1.8)
P 		256.1
(3)
M 		176
avr 55.8
(-3) 		151.8
(2.7) 		116.9
(0.6) 		157.5
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 107.3
(-2.6)
A 		121.6
(-2.1)
A 		134.1
(-1.7)
A 		93.2
(-3)
A 		230.4
(1.2)
P 		288.3
(3)
P 		195
B 123.5
(-2.3)
A 		179.1
(-0.5)
P 		100.9
(-3)
A 		124.5
(-2.2)
A 		214.1
(0.6)
P 		288.7
(3)
P 		188
C 14.1
(-3)
A 		165.6
(-0.2)
A 		94
(-1.5)
A 		150.9
(-0.5)
A 		175
(-0)
P 		339.9
(3)
P 		326
avr 81.6
(-3) 		155.4
(-1) 		109.7
(-2.2) 		122.9
(-1.9) 		206.5
(0.3) 		305.6
(3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.9
(-3)
A 		34.2
(3)
P 		23.4
(0.9)
A 		25.1
(1.2)
P 		30
B 24.4
(-0.2)
A 		40.9
(3)
P 		33.8
(1.6)
A 		9.7
(-3)
A 		31
C 26.5
(-3)
A 		38.2
(1.2)
A 		40.3
(2)
P 		43.2
(3)
M 		17
avr 18.3
(-3) 		37.8
(3) 		32.5
(1.4) 		26
(-0.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 19.8
(-3)
A 		43.2
(-0.2)
A 		29.2
(-1.9)
A 		23.6
(-2.5)
A 		69.5
(2.9)
P 		70.2
(3)
P 		50
B 43
(-1.7)
A 		59.6
(-0.5)
P 		24.5
(-3)
A 		33
(-2.4)
A 		87
(1.5)
P 		107.6
(3)
P 		83
C 5.2
(-3)
A 		50.5
(-0.5)
A 		23.9
(-2)
A 		30.4
(-1.6)
A 		56.6
(-0.2)
P 		113.8
(3)
P 		109
avr 22.7
(-3) 		51.1
(-0.7) 		25.9
(-2.7) 		29
(-2.5) 		71
(0.9) 		97.2
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191997_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.905
Sequence Type Exemplar sequence
Representative Public ID W04A8.1 NCBI
Target Description W04A8.1 /REP_DB=WormBase Gene ID /WP=CE16535 /TR=Q9XUM4 /GB=CAB04902.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BRCA1 C Terminus (BRCT) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061019 NCBI Caenorhabditis elegans W04A8.1 (W04A8.1) mRNA, complete cds. 11/11 None
SNAP00000006524 ENSEMBL cdna:SNAP chromosome:CEL140:I:13843542:13848110:-1 10/11 None
GENEFINDER00000006537 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13843542:13848110:-1 11/11 None
W04A8.1 ENSEMBL cdna:known chromosome:CEL140:I:13843458:13848122:-1 gene:W04A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13843472-13848041(-) 100.0 100.0
Public Domain and Genome References
Gene Title BRCA1 C Terminus (BRCT) domain
Ensembl W04A8.1
Entrez Gene 173252 Entrez gene
SwissProt Q9XUM4 EMBL-EBI
WormBase CE16535 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04902 Hypothetical protein W04A8.1 [Caenorhabditis elegans] ref|NP_493420.1| W04A8.1 [Caenorhabditis elegans] 0.0
blast CAE68009 Hypothetical protein CBG13622 [Caenorhabditis briggsae] 0.0
blast CAC70125 Hypothetical protein Y71A12B.13 [Caenorhabditis elegans] ref|NP_001021803.1| Y71A12B.13 [Caenorhabditis elegans] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 8.6E-4
Pfam IPR001357 EMBL-EBI BRCT 3.1E-4
Pfam IPR001357 EMBL-EBI BRCT 0.48
Pfam IPR001357 EMBL-EBI BRCT 3.1E-4
Pfam IPR001357 EMBL-EBI BRCT 0.74
Pfam IPR001357 EMBL-EBI BRCT 3.1E-4
Pfam IPR001357 EMBL-EBI BRCT 0.48
Sequence
Target Sequence 
>C. ELEGANS:191997_S_AT
atgaagtgattttcaccggctctccaatcgaaaagaagctgaaaaccatcgttcgccggt
tcaaaatgacgattagcacggaaattgatgaagaacggacgctttgtgtcgtttcgagac
acggaaaacggacgcttttggtgcttcgggcgatttgttgtgatgtacccatagttcgac
cgcaatggctagaagaatcatttgaagactcccaactccttccctcttccgactacattt
atcaggaatggcttcgaatcgaaaatttgaaaattttcgccaatttccatttgagaatgt
ggatcgcgcccgaatgtactccagactctgcggatttggcttggatgatcgaaaaatgcg
gtggaaaagtaacccgccacctgcatcgtgctgatctcgtcattgcacctgaaaattggg
aaattccagccgaaaacgatgtggaattcgagcttgccacgccgcttttcgtgattgatt
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGTGATTTTCACCGGCTCTCC 231 45 1484 Antisense
TGAAAACCATCGTTCGCCGGTTCAA 177 573 1523 Antisense
ACGCTTTTGGTGCTTCGGGCGATTT 219 89 1615 Antisense
TGTGATGTACCCATAGTTCGACCGC 624 553 1642 Antisense
ATCATTTGAAGACTCCCAACTCCTT 228 31 1680 Antisense
CCCTCTTCCGACTACATTTATCAGG 688 259 1705 Antisense
TTGAGAATGTGGATCGCGCCCGAAT 489 703 1774 Antisense
CCCGAATGTACTCCAGACTCTGCGG 404 261 1792 Antisense
GACTCTGCGGATTTGGCTTGGATGA 57 375 1807 Antisense
CGTGCTGATCTCGTCATTGCACCTG 479 245 1870 Antisense
ACGCCGCTTTTCGTGATTGATTCGA 420 91 1942 Antisense
Sequence Source Affymetrix Proprietary Database