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[191994_at] Protein-tyrosine phosphatase

Description Y113G7C.1 /REP_DB=WormBase Gene ID /WP=CE23304 /TR=Q9XWA6 /GB=CAA22059.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 2.3
(-3)
A 		30.4
(-0.4)
A 		37.4
(0.3)
A 		66.8
(3)
A 		65
B 27.7
(3)
A 		16.4
(-2)
A 		22
(0.5)
A 		14.1
(-3)
A 		14
C 26.8
(2.9)
A 		27
(3)
A 		12.6
(-3)
A 		23.6
(1.6)
A 		14
avr 18.9
(-3) 		24.6
(-0.8) 		24
(-1.1) 		34.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 53.7
(-0.4)
A 		11.8
(-3)
A 		13.8
(-2.9)
A 		40.3
(-1.2)
A 		55.8
(-0.3)
A 		109.1
(3)
P 		97
B 3.4
(-2.8)
A 		1.1
(-3)
A 		1.5
(-3)
A 		3.1
(-2.9)
A 		51.1
(0.7)
P 		83.1
(3)
P 		82
C 4
(-3)
A 		27.3
(-1.5)
A 		11.1
(-2.5)
A 		42.7
(-0.5)
A 		63.8
(0.9)
P 		96.8
(3)
P 		93
avr 20.4
(-2.2) 		13.4
(-2.7) 		8.8
(-3) 		28.7
(-1.6) 		56.9
(0.3) 		96.3
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		6.6
(0.8)
A 		9.8
(3)
A 		9.8
(3)
A 		9
B 8.8
(3)
A 		4.1
(-1.9)
A 		5.1
(-0.8)
A 		3
(-3)
A 		6
C 8.9
(3)
A 		7.8
(1.7)
A 		4.4
(-2.5)
A 		4
(-3)
A 		5
avr 6.2
(1.5) 		6.2
(1.5) 		6.4
(3) 		5.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 9.9
(-1.2)
A 		4.2
(-2.7)
A 		3
(-3)
A 		10.2
(-1.2)
A 		16.8
(0.5)
A 		26.6
(3)
P 		24
B 1.2
(-2.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		20.7
(1)
P 		31
(3)
P 		31
C 1.5
(-3)
A 		8.3
(-1.7)
A 		2.8
(-2.7)
A 		8.6
(-1.6)
A 		20.6
(0.7)
P 		32.4
(3)
P 		31
avr 4.2
(-2.5) 		4.3
(-2.5) 		2.1
(-3) 		6.5
(-2.1) 		19.4
(0.7) 		30
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13169
Sequence Type Exemplar sequence
Representative Public ID Y113G7C.1 NCBI
Target Description Y113G7C.1 /REP_DB=WormBase Gene ID /WP=CE23304 /TR=Q9XWA6 /GB=CAA22059.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075517 NCBI Caenorhabditis elegans Y113G7C.1 (Y113G7C.1) mRNA, complete cds. 11/11 None
SNAP00000018175 ENSEMBL cdna:SNAP chromosome:CEL140:V:20315734:20322017:1 11/11 None
GENEFINDER00000018176 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20315888:20322013:1 11/11 None
Y113G7C.1 ENSEMBL cdna:known chromosome:CEL140:V:20315888:20322062:1 gene:Y113G7C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20315887-20322017(+) 95.25 100.0
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
Ensembl Y113G7C.1
Entrez Gene 180332 Entrez gene
SwissProt Q9XWA6 EMBL-EBI
WormBase CE23304 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
blast CAD31816 Hypothetical protein Y39B6A.18 [Caenorhabditis elegans] ref|NP_741679.1| Y39B6A.18 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 3.4E-19
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-78
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 3.4E-19
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507918.1 1 986-1008
Y113G7C.1 1 986-1008
SNAP00000018175 1 1062-1084
GENEFINDER00000018176 1 986-1008
Sequence
Target Sequence 
>C. ELEGANS:191994_AT
gacgtttccaaatcacaacccagtcgcgccaactcatcttgagggacaatgtgattgaga
gaaagctgttggtgaaagacacgaccggaaagtttgaaccaaaaactgtgacgcactacc
agcacgttaaatggccggatcgcgatacaccgaagactcatgtcgacacttttgagctga
tggagctagtcaagaagagcgagaacccaatcgttgtccactgctctgctggaatcggaa
gaaccactgcattcattggtaccgaataccttgcacgtgaagtggagaacgacccgaaaa
ttgaactaaccgaggcgttgaagcacttgcgtgaacatcgctggaagggagttcagatga
gaagccagctgtactggatgactttgggagccgtgtaccgtctcatcagggaatacaatt
tcaacatgcgaatgcacacggatctaatgaaagattttgatcgagtcgtcgaacttcttg
cgggatatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTTCCAAATCACAACCCAGTC 547 369 3884 Antisense
TCGCGCCAACTCATCTTGAGGGACA 330 597 3907 Antisense
TGTGACGCACTACCAGCACGTTAAA 630 553 3990 Antisense
GCCGGATCGCGATACACCGAAGACT 360 283 4017 Antisense
GTCGACACTTTTGAGCTGATGGAGC 52 475 4045 Antisense
GAGCGAGAACCCAATCGTTGTCCAC 520 385 4080 Antisense
GAACCACTGCATTCATTGGTACCGA 521 345 4124 Antisense
AACCGAGGCGTTGAAGCACTTGCGT 421 145 4191 Antisense
TGGATGACTTTGGGAGCCGTGTACC 194 549 4258 Antisense
CCGTGTACCGTCTCATCAGGGAATA 549 263 4274 Antisense
TCGTCGAACTTCTTGCGGGATATGA 98 605 4349 Antisense
Sequence Source Affymetrix Proprietary Database