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[191993_at] glycogenin glucosyltransferase

Description M116.2 /REP_DB=WormBase Gene ID /WP=CE21082 /TR=O44521 /GB=AAB94141.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glycogenin glucosyltransferase
Cluster 6grp_high1_10_10 > 97      6grp_total > 79      4grp_total > 05      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 92.3
(-2)
P 		62
(-3)
A 		87.5
(-2.2)
P 		244.7
(3)
P 		183
B 111.3
(-0.3)
P 		11.9
(-3)
A 		48.7
(-2)
P 		233.6
(3)
P 		222
C 129.8
(1.1)
P 		27.9
(-3)
A 		57.7
(-1.8)
M 		178.6
(3)
P 		151
avr 111.1
(-0.5) 		33.9
(-3) 		64.6
(-2) 		219
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 70.7
(-2.7)
M 		141.6
(-0.1)
P 		61.5
(-3)
P 		139.3
(-0.1)
P 		134.2
(-0.3)
P 		224.6
(3)
P 		163
B 86.7
(-2.3)
P 		137.8
(0.4)
P 		72.6
(-3)
P 		114.3
(-0.8)
P 		119.9
(-0.5)
P 		186
(3)
P 		113
C 81.6
(-2.6)
P 		107.3
(-1.4)
P 		98.9
(-1.8)
P 		73.7
(-3)
A 		193.9
(2.7)
P 		199.7
(3)
P 		126
avr 79.7
(-2.9) 		128.9
(-0.6) 		77.7
(-3) 		109.1
(-1.5) 		149.3
(0.4) 		203.4
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 33.6
(2.4)
P 		13.5
(-3)
A 		22.9
(-0.5)
P 		35.8
(3)
P 		22
B 35.5
(1.2)
P 		2.9
(-3)
A 		11.3
(-1.9)
P 		49.8
(3)
P 		47
C 43
(3)
P 		8
(-3)
A 		20.1
(-0.9)
M 		30.1
(0.8)
P 		35
avr 37.4
(2.8) 		8.1
(-3) 		18.1
(-1) 		38.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 13
(-3)
M 		50.3
(2.4)
P 		13.4
(-2.9)
P 		35.3
(0.2)
P 		40.5
(1)
P 		54.7
(3)
P 		42
B 30.2
(-1.5)
P 		45.9
(0.3)
P 		17.6
(-3)
P 		30.3
(-1.5)
P 		48.7
(0.6)
P 		69.4
(3)
P 		52
C 30.2
(-1.2)
P 		32.7
(-0.9)
P 		25.2
(-1.8)
P 		14.8
(-3)
A 		62.8
(2.5)
P 		66.9
(3)
P 		52
avr 24.5
(-2.2) 		43
(0.2) 		18.7
(-3) 		26.8
(-1.9) 		50.7
(1.3) 		63.7
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8404
Sequence Type Exemplar sequence
Representative Public ID M116.2 NCBI
Target Description M116.2 /REP_DB=WormBase Gene ID /WP=CE21082 /TR=O44521 /GB=AAB94141.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glycogenin glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069027(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069027 NCBI Caenorhabditis elegans M116.2 (M116.2) mRNA, complete cds. 9/11 None
M116.2 ENSEMBL cdna:known chromosome:CEL140:IV:8398845:8399775:1 gene:M116.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005093 8/11 Cross Hyb Matching Probes None
GENEFINDER00000005099 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8398910-8399802(+) 93.21 100.0
Public Domain and Genome References
Gene Title glycogenin glucosyltransferase
Ensembl M116.2
Entrez Gene 177639 Entrez gene
SwissProt O44521 EMBL-EBI
WormBase CE33675 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94141 Hypothetical protein M116.2 [Caenorhabditis elegans] ref|NP_501428.3| M116.2 [Caenorhabditis elegans] 6.0E-45
blast CAB04823 Hypothetical protein T25E12.5 [Caenorhabditis elegans] ref|NP_507238.1| T25E12.5 [Caenorhabditis elegans] 9.0E-39
blast CAE67686 Hypothetical protein CBG13253 [Caenorhabditis briggsae] 5.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 2.5E-17
Sequence
Target Sequence 
>C. ELEGANS:191993_AT
cgaattcttcaccttcacaaagctccactgctggcgtctcactcaatactcaaatggtgt
tgtcttggatgctgacaccattctcatcagaaactccgacgaaccgatttcttttttttt
aggacccgatttctccgccgccgccaatattgaatggccggatatgctcgattcgggagt
ttttgtgttcacgccgtcgctcaccgtctaccgagctcttcttgctctcgccatctcgtc
cggctcattcgatggtagagatcaaggtcttctgaacgcgtacttctcaaactggcgtga
tctttcatcggctcaccggctcccgttcatttacaacatgacagctggagaattctactc
gtacctcgctgcctaccgaaaatacggagcacaaaccgaaatcgttcacttcatcggtgc
tcggaaccagcagagcagtgcgtcggagcaagagacggaacaagtgttcccgaggacact
agatgcaacttttgcccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAATTCTTCACCTTCACAAAGCTC 600 253 108 Antisense
GATGCTGACACCATTCTCATCAGAA 27 415 175 Antisense
CTCATCAGAAACTCCGACGAACCGA 192 227 190 Antisense
TCCGCCGCCGCCAATATTGAATGGC 6 597 241 Antisense
GAATGGCCGGATATGCTCGATTCGG 142 333 259 Antisense
CAAGGTCTTCTGAACGCGTACTTCT 110 185 370 Antisense
CTGGAGAATTCTACTCGTACCTCGC 83 241 452 Antisense
GAAATCGTTCACTTCATCGGTGCTC 89 363 505 Antisense
TCATCGGTGCTCGGAACCAGCAGAG 402 619 518 Antisense
ACCAGCAGAGCAGTGCGTCGGAGCA 286 83 533 Antisense
ACACTAGATGCAACTTTTGCCCGCC 606 109 583 Antisense
Sequence Source Affymetrix Proprietary Database