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[191991_s_at] Leucine Rich Repeat (2 copies)

Description C02C6.3 /REP_DB=WormBase Gene ID /WP=CE23515 /TR=Q93177 /GB=CAB01858.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 908
1 2 3 4 range
A 837.1
(3)
P 		837.8
(3)
P 		673
(1.4)
P 		205.9
(-3)
P 		632
B 1114
(3)
P 		673.1
(-0.4)
P 		455.7
(-2.1)
P 		332.6
(-3)
P 		781
C 855.5
(3)
P 		488.5
(-0.6)
P 		652.4
(1)
P 		243.5
(-3)
P 		612
avr 935.5
(3) 		666.5
(0.6) 		593.7
(-0) 		260.7
(-3) 		675

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 834
1 2 3 4 5 6 range
A 408.4
(-3)
P 		760.4
(3)
P 		472.5
(-1.9)
P 		692.7
(1.8)
P 		547.1
(-0.6)
P 		432.8
(-2.6)
P 		352
B 803.6
(1.7)
P 		759.8
(1.1)
P 		910.3
(3)
P 		791.2
(1.5)
P 		576.2
(-1.2)
P 		431.4
(-3)
P 		479
C 1103.2
(3)
P 		927.8
(1.7)
P 		496.2
(-1.4)
P 		589.7
(-0.7)
P 		781.5
(0.7)
P 		269
(-3)
P 		834
avr 771.7
(2.4) 		816
(3) 		626.3
(0.4) 		691.2
(1.3) 		634.9
(0.5) 		377.7
(-3) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 304.8
(3)
P 		181.9
(0.3)
P 		175.9
(0.2)
P 		30.1
(-3)
P 		275
B 355.3
(3)
P 		166.2
(-1)
P 		105.6
(-2.3)
P 		70.9
(-3)
P 		284
C 283.2
(3)
P 		140.5
(-0.5)
P 		227.4
(1.6)
P 		41.1
(-3)
P 		242
avr 314.4
(3) 		162.9
(-0.4) 		169.6
(-0.3) 		47.4
(-3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 75.3
(-3)
P 		270.4
(3)
P 		102.9
(-2.2)
P 		175.7
(0.1)
P 		165.1
(-0.2)
P 		105.4
(-2.1)
P 		195
B 279.6
(3)
P 		252.9
(1.7)
P 		221.1
(0)
P 		209.6
(-0.5)
P 		234.1
(0.7)
P 		160.9
(-3)
P 		119
C 408.9
(3)
P 		283.1
(0.6)
P 		126.3
(-2.3)
P 		118.6
(-2.5)
P 		252.9
(0.1)
P 		90.1
(-3)
P 		319
avr 254.6
(2.4) 		268.8
(3) 		150.1
(-1.7) 		168
(-1) 		217.4
(0.9) 		118.8
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191991_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17484
Sequence Type Exemplar sequence
Representative Public ID C02C6.3 NCBI
Target Description C02C6.3 /REP_DB=WormBase Gene ID /WP=CE23515 /TR=Q93177 /GB=CAB01858.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078165
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C02C6.3 ENSEMBL cdna:known chromosome:CEL140:X:15546726:15552151:-1 gene:C02C6.3 None
GENEFINDER00000042400 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15546781:15559577:-1 None
SNAP00000042396 ENSEMBL cdna:SNAP chromosome:CEL140:X:15550579:15552399:-1 None
NM_078165 NCBI Caenorhabditis elegans C02C6.3 (C02C6.3) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042395 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15546780-15552151(-) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies)
Ensembl C02C6.3
Entrez Gene 181643 Entrez gene
SwissProt Q93177 EMBL-EBI
WormBase CE29169 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01858 Hypothetical protein C02C6.3 [Caenorhabditis elegans] ref|NP_510566.1| C02C6.3 [Caenorhabditis elegans] 0.0
blast CAE63327 Hypothetical protein CBG07723 [Caenorhabditis briggsae] 0.0
blast CAB01858 Hypothetical protein C02C6.3 [Caenorhabditis elegans] ref|NP_510566.1| C02C6.3 [Caenorhabditis elegans] 3.0E-67
blast CAE63327 Hypothetical protein CBG07723 [Caenorhabditis briggsae] 3.0E-63
blast BAE00432.1 unnamed protein product [Macaca fascicularis] sp|Q4R8Y9|TPBG_MACFA Trophoblast glycoprotein precursor 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.033
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.08
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.13
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.033
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.08
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.13
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042396 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:191991_S_AT
atgttccgtcaagcaaaactcgaatatctccagttgaaatttagtttcgacaacaattgg
aacatattttatttttttgccgaaaaaattcgtcatttcattcatatgagcggcgattat
ttaaagaaattaatggtacttttaagtttttttttactgttatttattatttttacaatg
aagcttgaacttgtatgtatttccaaagttagttatggtatttttaagtctaaaaatata
caagcatcgaatgttgttcttcgaatcagatttgaaaaaaaaacaaatttcattcaacat
ttcaggaaccagttctacgtgattccaaaagatttccgtgctctggcggataaagctcaa
cctgaaacattcttgctgcgcaaccaattctactgcgactgcaactccaaggaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCGTCAAGCAAAACTCGAAT 468 15 607 Antisense
GAAGCTTGAACTTGTATGTATTTCC 557 341 786 Antisense
GAATGTTGTTCTTCGAATCAGATTT 497 331 855 Antisense
CATTCAACATTTCAGGAACCAGTTC 701 211 897 Antisense
GAACCAGTTCTACGTGATTCCAAAA 179 345 912 Antisense
CCAAAAGATTTCCGTGCTCTGGCGG 1 277 931 Antisense
GCTCTGGCGGATAAAGCTCAACCTG 516 297 946 Antisense
GCTCAACCTGAAACATTCTTGCTGC 27 303 961 Antisense
AACATTCTTGCTGCGCAACCAATTC 616 137 972 Antisense
GCAACCAATTCTACTGCGACTGCAA 298 321 986 Antisense
CTGCGACTGCAACTCCAAGGAATTC 194 237 999 Antisense
Sequence Source Affymetrix Proprietary Database