[Home] | [Total List]

[191990_at]

Description C24F3.6_rc /REP_DB=WormBase Gene ID /WP=CE18523 /TR=Q9NAR3 /GB=CAB97232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=CUTICLE COLLAGEN 1
Cluster 6grp_total > 94      4grp_total > 43      6grp_cgc > 88      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 31.2
(-0.1)
A 		60.3
(3)
A 		4.5
(-3)
A 		13.3
(-2.1)
A 		56
B 4.2
(-2.9)
A 		25.2
(3)
A 		15.9
(0.4)
A 		3.8
(-3)
A 		21
C 3.6
(-3)
A 		12.1
(2.7)
A 		12.6
(3)
A 		5.3
(-1.9)
A 		9
avr 13
(-1.7) 		32.5
(3) 		11
(-2.2) 		7.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11
(-1.5)
A 		4.7
(-2.6)
A 		3.4
(-2.8)
A 		24.9
(0.9)
A 		37.4
(3)
A 		2.1
(-3)
A 		35
B 4.1
(-3)
A 		7.1
(-2.2)
A 		4.5
(-2.9)
A 		25.7
(2.4)
A 		15.2
(-0.2)
A 		27.9
(3)
A 		24
C 9.3
(-1.8)
A 		8.2
(-2)
A 		2.2
(-3)
A 		8.4
(-2)
A 		39.1
(3)
A 		25.3
(0.8)
A 		37
avr 8.1
(-2) 		6.7
(-2.3) 		3.4
(-3) 		19.7
(0.6) 		30.6
(3) 		18.4
(0.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.3
(2.1)
A 		13.1
(3)
A 		1.2
(-3)
A 		2
(-2.6)
A 		12
B 1.3
(-2.4)
A 		6.2
(3)
A 		3.7
(0.2)
A 		0.8
(-3)
A 		5
C 1.2
(-2.5)
A 		3.5
(1.5)
A 		4.4
(3)
A 		0.9
(-3)
A 		4
avr 4.6
(0.2) 		7.6
(3) 		3.1
(-1.2) 		1.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-2.2)
A 		1.7
(-2.3)
A 		0.7
(-2.9)
A 		6.3
(0.2)
A 		11.3
(3)
A 		0.5
(-3)
A 		11
B 1.4
(-2.8)
A 		2.4
(-2.2)
A 		1.1
(-3)
A 		6.8
(0.7)
A 		6.2
(0.3)
A 		10.4
(3)
A 		9
C 3.4
(-1.6)
A 		2.5
(-2.1)
A 		0.6
(-3)
A 		1.7
(-2.5)
A 		12.7
(3)
A 		8.5
(0.9)
A 		12
avr 2.3
(-2) 		2.2
(-2.1) 		0.8
(-3) 		4.9
(-0.4) 		10.1
(3) 		6.5
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28131
Sequence Type Exemplar sequence
Representative Public ID C24F3.6 NCBI
Target Description C24F3.6_rc /REP_DB=WormBase Gene ID /WP=CE18523 /TR=Q9NAR3 /GB=CAB97232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=CUTICLE COLLAGEN 1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C24F3.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C24F3.6 C24F3.6_rc /REP_DB=WormBase Gene ID /WP=CE18523 /TR=Q9NAR3 /GB=CAB97232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=CUTICLE COLLAGEN 1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069466 11/11 Negative Strand Matching Probes A 
SNAP00000043526 11/11 Negative Strand Matching Probes None
GENEFINDER00000043530 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10216454-10217380(-) 90.98 100.0
Public Domain and Genome References
Ensembl C24F3.6
Sequence
Target Sequence 
>C. ELEGANS:191990_AT
tccttctgggcatggcttgcatggtggtggagtgagtggctcacatggctcctttggtgg
gcgtcctggatttccgttgagtccaggagctcctggctttcctgggcgtccagcgcttcc
tggggttcctggtggtccttgtgctcccggaaggcagcatccctcgcattgtccgtttcc
ttctccagcttgacgagcagtacggttgtgtgccatcataagatctgggatacggttgac
ttgagagaaaagacgttgagcctcagacttgcactcaacgatgtcactgtgcatgacctt
gcgagtgtgatggatgtagttatacatcattggaagagtgatacatacagacaacactgc
aatggtggagaaagtcaaggcagcatatccgacgaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCTGGGCATGGCTTGCATGGT 347 591 460 Antisense
GAGTGAGTGGCTCACATGGCTCCTT 523 401 489 Antisense
GGATTTCCGTTGAGTCCAGGAGCTC 401 493 527 Antisense
TGAGTCCAGGAGCTCCTGGCTTTCC 642 563 537 Antisense
TCCTTCTCCAGCTTGACGAGCAGTA 97 593 637 Antisense
GAGCAGTACGGTTGTGTGCCATCAT 428 389 654 Antisense
AGATCTGGGATACGGTTGACTTGAG 83 67 680 Antisense
GACGTTGAGCCTCAGACTTGCACTC 260 377 711 Antisense
GACTTGCACTCAACGATGTCACTGT 611 371 725 Antisense
GTCACTGTGCATGACCTTGCGAGTG 386 465 742 Antisense
TCAAGGCAGCATATCCGACGAAGCG 513 631 834 Antisense
Sequence Source Affymetrix Proprietary Database