[Home] | [Total List]

[191987_at] aspartyl beta hydroxylase like

Description K09A9.6 /REP_DB=WormBase Gene ID /WP=CE11982 /TR=Q93178 /GB=CAB01887.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=aspartyl beta hydroxylase like
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 13      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 559.4
(3)
P 		347
(0.5)
P 		406.6
(1.2)
P 		45.6
(-3)
A 		514
B 563.9
(3)
P 		425.5
(1.3)
P 		378.8
(0.7)
P 		77.4
(-3)
A 		487
C 532.9
(3)
P 		421.3
(1.5)
P 		410.7
(1.3)
P 		90.4
(-3)
A 		443
avr 552.1
(3) 		397.9
(1.1) 		398.7
(1.1) 		71.1
(-3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 548
1 2 3 4 5 6 range
A 501.2
(-0.1)
P 		778.6
(3)
P 		498.7
(-0.1)
P 		351.7
(-1.7)
P 		256.4
(-2.8)
P 		235.5
(-3)
P 		543
B 544.1
(1.6)
P 		627.6
(2.9)
P 		635.1
(3)
P 		349.4
(-1.4)
P 		294.9
(-2.2)
P 		245.5
(-3)
P 		390
C 540.5
(1.3)
P 		662.3
(3)
P 		485.4
(0.5)
P 		373.2
(-1)
P 		270.7
(-2.4)
P 		230.6
(-3)
P 		432
avr 528.6
(0.9) 		689.5
(3) 		539.7
(1) 		358.1
(-1.4) 		274
(-2.5) 		237.2
(-3) 		452
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 203.7
(3)
P 		75.3
(-0.9)
P 		106.3
(0)
P 		6.7
(-3)
A 		197
B 179.8
(3)
P 		105.1
(0.3)
P 		87.8
(-0.4)
P 		16.5
(-3)
A 		163
C 176.4
(3)
P 		121.1
(0.9)
P 		143.1
(1.8)
P 		15.2
(-3)
A 		161
avr 186.6
(3) 		100.5
(0) 		112.4
(0.4) 		12.8
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 92.4
(-2)
P 		276.9
(3)
P 		108.6
(-1.6)
P 		89.2
(-2.1)
P 		77.4
(-2.5)
P 		57.3
(-3)
P 		220
B 189.3
(2)
P 		208.9
(3)
P 		154.2
(0.2)
P 		92.5
(-2.9)
P 		119.8
(-1.6)
P 		91.5
(-3)
P 		117
C 200.3
(2.9)
P 		202.1
(3)
P 		123.5
(-0.7)
P 		75.1
(-3)
P 		87.6
(-2.4)
P 		77.2
(-2.9)
P 		127
avr 160.7
(0.3) 		229.3
(3) 		128.8
(-0.9) 		85.6
(-2.6) 		94.9
(-2.2) 		75.3
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17772
Sequence Type Exemplar sequence
Representative Public ID K09A9.6 NCBI
Target Description K09A9.6 /REP_DB=WormBase Gene ID /WP=CE11982 /TR=Q93178 /GB=CAB01887.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=aspartyl beta hydroxylase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078167 NCBI Caenorhabditis elegans K09A9.6 (K09A9.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000037631 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15580518:15586666:1 11/11 None
SNAP00000037619 ENSEMBL cdna:SNAP chromosome:CEL140:X:15584582:15586115:1 11/11 None
K09A9.6 ENSEMBL cdna:known chromosome:CEL140:X:15577388:15586719:1 gene:K09A9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15577573-15586666(+) 89.12 100.0
Public Domain and Genome References
Gene Title aspartyl beta hydroxylase like
Ensembl K09A9.6
Entrez Gene 181645 Entrez gene
SwissProt Q93178 EMBL-EBI
WormBase CE11982 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629597_A_AT Aspartyl hydroxylase dm
DROSGENOME1:147279_AT Aspartyl hydroxylase dm
DROSOPHILA_2:1625600_A_AT Aspartyl hydroxylase dm
DROSGENOME1:153202_AT Aspartyl hydroxylase dm
HG-U133_PLUS_2:207284_S_AT aspartate beta-hydroxylase hs
HG-U133A:207284_S_AT aspartate beta-hydroxylase hs
HG-U133A_2:207284_S_AT aspartate beta-hydroxylase hs
HG-U133A:209135_AT aspartate beta-hydroxylase hs
HG-U133_PLUS_2:209135_AT aspartate beta-hydroxylase hs
HG-FOCUS:209135_AT aspartate beta-hydroxylase hs
HG-U133A_2:209135_AT aspartate beta-hydroxylase hs
HG-U133_PLUS_2:205808_AT aspartate beta-hydroxylase hs
HG-U133A_2:205808_AT aspartate beta-hydroxylase hs
HG-U133A:205808_AT aspartate beta-hydroxylase hs
HG-U133_PLUS_2:210896_S_AT aspartate beta-hydroxylase hs
HG-U133A:210896_S_AT aspartate beta-hydroxylase hs
HG-U133A_2:210896_S_AT aspartate beta-hydroxylase hs
HUGENEFL:S83325_S_AT aspartate beta-hydroxylase hs
U133_X3P:G9910363_3P_A_AT aspartate beta-hydroxylase hs
U133_X3P:G4757799_3P_AT aspartate beta-hydroxylase hs
U133_X3P:G11991236_3P_A_AT aspartate beta-hydroxylase hs
U133_X3P:G11878115_3P_AT aspartate beta-hydroxylase hs
HG-U95AV2:37528_AT aspartate beta-hydroxylase hs
HG-U95C:56660_AT aspartate beta-hydroxylase hs
HG-U95E:73214_AT aspartate beta-hydroxylase hs
HU35KSUBD:RC_AA284266_AT Aspartate beta-hydroxylase hs
HG-U95C:61653_AT Aspartate beta-hydroxylase hs
HG-U95C:64711_AT Aspartate beta-hydroxylase hs
HG-U95E:71600_AT Aspartate beta-hydroxylase hs
HG-U95D:72869_R_AT Aspartate beta-hydroxylase hs
U133_X3P:HS.29419.0.A1_3P_AT Aspartate beta-hydroxylase hs
U133_X3P:HS.55258.0.A1_3P_AT Aspartate beta-hydroxylase hs
MOE430A:1425274_AT aspartate-beta-hydroxylase mm
MOUSE430A_2:1425274_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1425274_AT aspartate-beta-hydroxylase mm
MOUSE430A_2:1426015_S_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1426015_S_AT aspartate-beta-hydroxylase mm
MOE430A:1426015_S_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1425275_AT aspartate-beta-hydroxylase mm
MOUSE430A_2:1425275_AT aspartate-beta-hydroxylase mm
MOE430A:1425275_AT aspartate-beta-hydroxylase mm
MU11KSUBA:AA269495_AT aspartate-beta-hydroxylase mm
MG-U74BV2:115427_AT aspartate-beta-hydroxylase mm
MG-U74CV2:134116_AT aspartate-beta-hydroxylase mm
MG-U74BV2:164131_AT aspartate-beta-hydroxylase mm
MG-U74CV2:166924_I_AT aspartate-beta-hydroxylase mm
MG-U74CV2:170688_AT aspartate-beta-hydroxylase mm
MG-U74CV2:169251_R_AT aspartate-beta-hydroxylase mm
MOE430A:1420959_AT aspartate-beta-hydroxylase mm
MOUSE430A_2:1420959_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1420959_AT aspartate-beta-hydroxylase mm
MOE430A:1450058_AT aspartate-beta-hydroxylase mm
MOUSE430A_2:1450058_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1450058_AT aspartate-beta-hydroxylase mm
MOE430B:1436455_AT aspartate-beta-hydroxylase mm
MOUSE430_2:1436455_AT aspartate-beta-hydroxylase mm
RG-U34A:RC_AA799621_AT Aspartate-beta-hydroxylase (predicted) rn
RG-U34B:RC_AI030556_AT Aspartate-beta-hydroxylase (predicted) rn
RAE230A:1379884_AT Aspartate-beta-hydroxylase (predicted) rn
RAT230_2:1379884_AT Aspartate-beta-hydroxylase (predicted) rn
RAE230B:1381046_AT Aspartate-beta-hydroxylase (predicted) rn
RAT230_2:1381046_AT Aspartate-beta-hydroxylase (predicted) rn
RAE230B:1393141_AT Aspartate-beta-hydroxylase (predicted) rn
RAT230_2:1393141_AT Aspartate-beta-hydroxylase (predicted) rn
RAE230B:1393345_AT Aspartate-beta-hydroxylase (predicted) rn
RAT230_2:1393345_AT Aspartate-beta-hydroxylase (predicted) rn
RAE230B:1395745_AT Aspartate-beta-hydroxylase (predicted) rn
RAT230_2:1395745_AT Aspartate-beta-hydroxylase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
18193 peptidyl-amino acid modification inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30176 integral to endoplasmic reticulum membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4597 peptide-aspartate beta-dioxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01887 Hypothetical protein K09A9.6 [Caenorhabditis elegans] emb|CAB01859.1| Hypothetical protein K09A9.6 [Caenorhabditis elegans] ref|NP_510568.1| K09A9.6 [Caenorhabditis elegans] 0.0
blast CAE63329 Hypothetical protein CBG07728 [Caenorhabditis briggsae] 0.0
blast NP_004309 aspartate beta-hydroxylase isoform a [Homo sapiens] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR007803 EMBL-EBI Aspartyl/Asparaginyl beta-hydroxylase 1.1E-80
Pfam IPR007803 EMBL-EBI Aspartyl/Asparaginyl beta-hydroxylase 1.1E-80
Pfam IPR007803 EMBL-EBI Aspartyl/Asparaginyl beta-hydroxylase 1.1E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510568.1 1 46-65
K09A9.6 1 46-65
GENEFINDER00000037631 1 55-74
Sequence
Target Sequence 
>C. ELEGANS:191987_AT
tgggagttttcatgactgcccagcagagaagcttgtacaacattgaaggactcaccggca
gggcttggtgggcaatggatcagactccgtactccaagtttctgaagacagttgaacggc
agtgggcgacaatcagacaggaaggcatggaggttttgaaggattgcagcgattgttggt
tggatcataaccaacagctcgtcatcgatggacaatggaagttcttcccaattatgtccg
agcaaaattttataaaatctagctgcgagagaatgccacagacatgcttaatccttcaag
aatttgcagcttccagtaatgccagcaagtcagatatgcatttgtcggtgttatcatcag
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGAGTTTTCATGACTGCCCAGCA 88 553 2006 Antisense
CTCACCGGCAGGGCTTGGTGGGCAA 450 227 2056 Antisense
GGCAATGGATCAGACTCCGTACTCC 73 535 2076 Antisense
ACTCCGTACTCCAAGTTTCTGAAGA 355 99 2089 Antisense
ACGGCAGTGGGCGACAATCAGACAG 284 95 2121 Antisense
GGATTGCAGCGATTGTTGGTTGGAT 396 507 2166 Antisense
ATCATAACCAACAGCTCGTCATCGA 410 29 2189 Antisense
AAGTTCTTCCCAATTATGTCCGAGC 685 155 2224 Antisense
GCCACAGACATGCTTAATCCTTCAA 493 277 2280 Antisense
GCAGCTTCCAGTAATGCCAGCAAGT 258 313 2311 Antisense
GCATTTGTCGGTGTTATCATCAGGT 324 309 2343 Antisense
Sequence Source Affymetrix Proprietary Database