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[191980_at] Zinc-finger motif C2H2 type

Description K01B6.1 /REP_DB=WormBase Gene ID /WP=CE00238 /TR=SW:P34489 /GB=CAA80128.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc-finger motif C2H2 type
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 91      6grp_total > 82      4grp_total > 33      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 105.4
(-3)
P 		287.1
(3)
P 		175.7
(-0.7)
P 		201
(0.2)
P 		182
B 105.3
(-3)
P 		132.6
(-0.4)
P 		156.5
(1.8)
P 		168.9
(3)
P 		64
C 105.9
(-3)
P 		177.9
(1.9)
P 		194
(3)
P 		177.2
(1.9)
P 		88
avr 105.5
(-3) 		199.2
(3) 		175.4
(1.5) 		182.4
(1.9) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 93.4
(-3)
P 		265.6
(2.1)
P 		171.7
(-0.7)
P 		215.7
(0.6)
P 		296
(3)
P 		103
(-2.7)
P 		203
B 148.8
(-3)
P 		194.5
(-0.5)
P 		159.6
(-2.4)
P 		259.8
(3)
P 		258.7
(2.9)
P 		164.7
(-2.1)
P 		111
C 116.9
(-2.8)
P 		222
(0.4)
P 		203.3
(-0.2)
P 		237.3
(0.8)
P 		309
(3)
P 		111.5
(-3)
P 		198
avr 119.7
(-3) 		227.4
(0.8) 		178.2
(-0.9) 		237.6
(1.2) 		287.9
(3) 		126.4
(-2.8) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 38.4
(-1.4)
P 		62.3
(3)
P 		45.9
(0)
P 		29.4
(-3)
P 		33
B 33.6
(-1.5)
P 		32.7
(-3)
P 		36.3
(3)
P 		36
(2.5)
P 		4
C 35.1
(-2.2)
P 		51.1
(0.4)
P 		67.6
(3)
P 		29.9
(-3)
P 		38
avr 35.7
(-1.7) 		48.7
(2.6) 		49.9
(3) 		31.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 17.2
(-3)
P 		94.5
(3)
P 		37.4
(-1.4)
P 		54.7
(-0.1)
P 		89.3
(2.6)
P 		25.1
(-2.4)
P 		77
B 51.8
(-1.8)
P 		64.8
(-0.6)
P 		38.7
(-3)
P 		68.8
(-0.3)
P 		105.1
(3)
P 		61.4
(-0.9)
P 		66
C 43.3
(-2.4)
P 		67.7
(-0.1)
P 		51.8
(-1.6)
P 		47.7
(-2)
P 		100
(3)
P 		37.3
(-3)
P 		63
avr 37.4
(-3) 		75.7
(0.8) 		42.6
(-2.5) 		57.1
(-1.1) 		98.1
(3) 		41.3
(-2.6) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6221
Sequence Type Exemplar sequence
Representative Public ID K01B6.1 NCBI
Target Description K01B6.1 /REP_DB=WormBase Gene ID /WP=CE00238 /TR=SW:P34489 /GB=CAA80128.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc-finger motif C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066646 NCBI Caenorhabditis elegans FOrm-homology and ZInc finger domains family member (fozi-1) (fozi-1) mRNA, complete cds. 11/11 None
SNAP00000010283 ENSEMBL cdna:SNAP chromosome:CEL140:III:9293105:9295916:1 11/11 None
GENEFINDER00000010290 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9293108:9295916:1 11/11 None
K01B6.1 ENSEMBL cdna:known chromosome:CEL140:III:9285951:9296528:1 gene:K01B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9293100-9295912(+) 97.18 100.0
Public Domain and Genome References
Gene Title Zinc-finger motif C2H2 type
Gene Symbol fozi-1
Ensembl K01B6.1
Entrez Gene 176308 Entrez gene
SwissProt P34489 EMBL-EBI
WormBase CE00238 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80128 Hypothetical protein K01B6.1 [Caenorhabditis elegans] ref|NP_499047.1| FOrm-homology and ZInc finger domains family member (fozi-1) [Caenorhabditis elegans] sp|P34489|YMM1_CAEEL Hypothetical protein K01B6.1 in chromosome III 0.0
blast CAE65252 Hypothetical protein CBG10136 [Caenorhabditis briggsae] 0.0
blast CAH65218 hypothetical protein [Gallus gallus] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 3.6E-69
Pfam IPR003104 EMBL-EBI Actin-binding FH2 3.6E-69
Sequence
Target Sequence 
>C. ELEGANS:191980_AT
cgggctcttcggaatgtcatgcaacttgtactcgcgattctcaatattggattcttcgat
gatcgtcaatgtctttcaatcaatggattctcagtttcagatatcagttctattttatca
acaaacacaccatctggtcaatctgtgcaatcgatccttgttacaatattgaaagatgaa
attaatttggatcttgatgagcttttcggtcttattgatgtgctcgaaaaaattgaaaat
gatgatgtcaactcagttgcacaggatttaatggtattggatgataaaacagttcgggca
gaaaaagaaatggagcacagtggatcaaatatacctctcagtgagtttgttgaaaacgcg
aagacaatttcaaaggagcgatgggaacatttcaaatccttgaagacaagcattgaaaga
ctcactatatatcttggaagcccactgccacgccatcaaaatcttgatgctcactctcca
ttcaacaacgtgctccaaatgctccgatccttaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGGCTCTTCGGAATGTCATGCAAC 508 243 1636 Antisense
TCATGCAACTTGTACTCGCGATTCT 189 623 1652 Antisense
TATCAACAAACACACCATCTGGTCA 170 659 1751 Antisense
GGTCAATCTGTGCAATCGATCCTTG 30 505 1771 Antisense
GGATCTTGATGAGCTTTTCGGTCTT 106 511 1824 Antisense
GCTTTTCGGTCTTATTGATGTGCTC 262 305 1836 Antisense
AGTGGATCAAATATACCTCTCAGTG 705 57 1954 Antisense
TATATATCTTGGAAGCCCACTGCCA 486 661 2061 Antisense
TCAAAATCTTGATGCTCACTCTCCA 36 631 2091 Antisense
TCACTCTCCATTCAACAACGTGCTC 267 627 2106 Antisense
CTCCAAATGCTCCGATCCTTAAAAA 151 235 2128 Antisense
Sequence Source Affymetrix Proprietary Database