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[191978_at]

Description F02G3.1 /REP_DB=WormBase Gene ID /WP=CE27122 /TR=Q19128 /GB=AAK39221.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=neural cell adhesion molecule
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 15      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 375.7
(3)
P 		163.4
(-1.5)
P 		154
(-1.7)
P 		95.4
(-3)
A 		280
B 316.6
(3)
P 		103.8
(-3)
P 		121.4
(-2.5)
P 		106.9
(-2.9)
P 		213
C 296.2
(3)
P 		172.6
(-0.3)
P 		129.9
(-1.5)
P 		73.5
(-3)
P 		223
avr 329.5
(3) 		146.6
(-1.6) 		135.1
(-1.9) 		91.9
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 334
(2.1)
P 		368.9
(3)
P 		130.3
(-2.9)
P 		154.5
(-2.3)
P 		153
(-2.3)
P 		126.7
(-3)
P 		242
B 290.2
(1.9)
P 		335.1
(3)
P 		237.6
(0.7)
P 		122.6
(-2)
P 		144.4
(-1.5)
P 		79
(-3)
P 		256
C 639.4
(3)
P 		360.6
(-0.1)
P 		261.6
(-1.2)
P 		205.7
(-1.8)
P 		149
(-2.4)
P 		93.8
(-3)
P 		546
avr 421.2
(3) 		354.9
(1.8) 		209.8
(-0.9) 		160.9
(-1.9) 		148.8
(-2.1) 		99.8
(-3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 136.8
(3)
P 		35.5
(-1.9)
P 		40.3
(-1.7)
P 		14
(-3)
A 		123
B 100.9
(3)
P 		25.6
(-2.8)
P 		28.1
(-2.6)
P 		22.8
(-3)
P 		78
C 98.1
(3)
P 		49.6
(-0.4)
P 		45.3
(-0.7)
P 		12.4
(-3)
P 		86
avr 111.9
(3) 		36.9
(-1.7) 		37.9
(-1.6) 		16.4
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 61.6
(-1.1)
P 		131.2
(3)
P 		28.4
(-3)
P 		39.2
(-2.4)
P 		46.2
(-2)
P 		30.9
(-2.9)
P 		103
B 101
(2.2)
P 		111.5
(3)
P 		57.7
(-0.9)
P 		32.5
(-2.8)
P 		58.7
(-0.9)
P 		29.5
(-3)
P 		82
C 237
(3)
P 		110
(-0.7)
P 		66.6
(-2)
P 		41.4
(-2.7)
P 		48.2
(-2.5)
P 		31.4
(-3)
P 		206
avr 133.2
(3) 		117.6
(2.1) 		50.9
(-1.8) 		37.7
(-2.6) 		51
(-1.8) 		30.6
(-3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18166
Sequence Type Exemplar sequence
Representative Public ID F02G3.1 NCBI
Target Description F02G3.1 /REP_DB=WormBase Gene ID /WP=CE27122 /TR=Q19128 /GB=AAK39221.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=neural cell adhesion molecule
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171616(11), NM_171615(11), NM_171617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171616 NCBI Caenorhabditis elegans NCAM (neural cell adhesion molecule) homolog family member (ncam-1) (ncam-1) mRNA, complete cds. 11/11 None
NM_171615 NCBI Caenorhabditis elegans NCAM (neural cell adhesion molecule) homolog family member (ncam-1) (ncam-1) mRNA, complete cds. 11/11 None
NM_171617 NCBI Caenorhabditis elegans NCAM (neural cell adhesion molecule) homolog family member (ncam-1) (ncam-1) mRNA, complete cds. 11/11 None
GENEFINDER00000002295 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:699713:702726:1 11/11 None
SNAP00000002286 ENSEMBL cdna:SNAP chromosome:CEL140:X:699723:702537:1 11/11 None
F02G3.1b ENSEMBL cdna:known chromosome:CEL140:X:692977:703024:1 gene:F02G3.1 11/11 None
F02G3.1a ENSEMBL cdna:known chromosome:CEL140:X:693004:703038:1 gene:F02G3.1 11/11 None
F02G3.1c ENSEMBL cdna:known chromosome:CEL140:X:695066:702537:1 gene:F02G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:695066-702537(+) 100.0 100.0
Public Domain and Genome References
Ensembl F02G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54203 Hypothetical protein F02G3.1b [Caenorhabditis elegans] ref|NP_741708.1| NCAM (neural cell adhesion molecule) homolog family member (ncam-1) [Caenorhabditis elegans] 0.0
blast AAM54202 Hypothetical protein F02G3.1a [Caenorhabditis elegans] ref|NP_741707.3| NCAM (neural cell adhesion molecule) homolog family member (ncam-1) [Caenorhabditis elegans] gb|AAL60231.1| immunoglobulin domain-containing protein F02G3.1 [Caenorhabditis elegans] 0.0
blast AAM54204 Hypothetical protein F02G3.1c [Caenorhabditis elegans] ref|NP_741709.1| NCAM (neural cell adhesion molecule) homolog family member (ncam-1) [Caenorhabditis elegans] 0.0
blast T29583 hypothetical protein F02G3.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741708.1 2 5-24,861-883
NP_741707.3 2 5-24,861-883
NP_741709.1 2 32-51,888-910
F02G3.1b 2 5-24,861-883
F02G3.1a 2 5-24,861-883
F02G3.1c 2 32-51,888-910
GENEFINDER00000002295 1 583-605
SNAP00000002286 1 557-579
Sequence
Target Sequence 
>C. ELEGANS:191978_AT
gtgaggagcaggagacaacccttgctcatgaagactctgctgaaattctaccaaccgatc
caagcacttcagtggagagagatgagatggttccatacggaagccttcttgttctaaatg
tggattccgaggaaaatcaagtgcagctgacaaatatcaagcagcactcttattacaaaa
tcagtgttgctgccgaaaatgaaaagggtcaaggagaaccagcggagatagacttccaaa
ctgatgattccccaacaaaatacgaggaaggaattgattctactcacttgattattgcaa
ttgcaattggagtacttttcttactacttctagtggatctagggtgctttatcacaaata
aatgtgggcttatttcttgcatatgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGGAGCAGGAGACAACCCTTGC 301 457 2453 Antisense
CAACCCTTGCTCATGAAGACTCTGC 284 187 2468 Antisense
TGAAATTCTACCAACCGATCCAAGC 82 573 2493 Antisense
CCAACCGATCCAAGCACTTCAGTGG 153 277 2503 Antisense
GATGGTTCCATACGGAAGCCTTCTT 669 407 2538 Antisense
AAGCCTTCTTGTTCTAAATGTGGAT 343 149 2553 Antisense
ATATCAAGCAGCACTCTTATTACAA 133 21 2606 Antisense
GACTTCCAAACTGATGATTCCCCAA 13 371 2683 Antisense
GGAGTACTTTTCTTACTACTTCTAG 350 513 2761 Antisense
GTGGATCTAGGGTGCTTTATCACAA 10 491 2785 Antisense
GTGGGCTTATTTCTTGCATATGTTT 319 489 2816 Antisense
Sequence Source Affymetrix Proprietary Database