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[191974_at] nucleoside diphosphate kinase

Description F55A3.6 /REP_DB=WormBase Gene ID /WP=CE17115 /TR=Q9N5S1 /GB=AAF39837.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=nucleoside diphosphate kinase
Cluster 6grp_total > 20      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 60.8
(2.9)
A 		53.5
(1.3)
A 		33.7
(-3)
A 		61.1
(3)
A 		27
B 22.9
(-2.7)
A 		92.5
(3)
A 		18.7
(-3)
A 		48.5
(-0.6)
A 		74
C 39.2
(1.4)
A 		17.3
(-3)
A 		26.9
(-1.1)
A 		47
(3)
A 		30
avr 41
(0.1) 		54.4
(3) 		26.4
(-3) 		52.2
(2.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 17.1
(-1.5)
A 		15.9
(-1.6)
A 		48.2
(3)
A 		38.4
(1.6)
A 		6.4
(-3)
A 		20.7
(-0.9)
A 		42
B 20.2
(-0.2)
A 		41.3
(3)
A 		28.2
(1)
A 		28.1
(1)
A 		34
(1.9)
A 		2.3
(-3)
A 		39
C 24.8
(-1.1)
A 		71.5
(3)
P 		3.9
(-2.9)
A 		23.2
(-1.2)
A 		3.2
(-3)
A 		24.6
(-1.1)
A 		68
avr 20.7
(-1.7) 		42.9
(3) 		26.8
(-0.4) 		29.9
(0.3) 		14.5
(-3) 		15.9
(-2.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.1
(3)
A 		11.6
(-1.7)
A 		8.8
(-3)
A 		8.9
(-3)
A 		13
B 7.3
(-2)
A 		22.8
(3)
A 		4.3
(-3)
A 		10.3
(-1.1)
A 		19
C 13
(3)
A 		5
(-3)
A 		9.4
(0.3)
A 		7.9
(-0.8)
A 		8
avr 14.1
(3) 		13.1
(2.1) 		7.5
(-3) 		9
(-1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.1
(-2.2)
A 		5.6
(-0.4)
A 		10.5
(3)
A 		9.7
(2.4)
A 		1.9
(-3)
A 		5
(-0.8)
A 		9
B 7
(-0.2)
A 		13.8
(3)
A 		6.8
(-0.3)
A 		7.4
(0)
A 		13.8
(3)
A 		0.9
(-3)
A 		13
C 9.2
(-0.6)
A 		21.8
(3)
P 		1
(-3)
A 		4.7
(-1.9)
A 		1
(-3)
A 		8.2
(-0.9)
A 		21
avr 6.4
(-1.9) 		13.7
(3) 		6.1
(-2.1) 		7.3
(-1.3) 		5.6
(-2.4) 		4.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.594
Sequence Type Exemplar sequence
Representative Public ID F55A3.6 NCBI
Target Description F55A3.6 /REP_DB=WormBase Gene ID /WP=CE17115 /TR=Q9N5S1 /GB=AAF39837.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=nucleoside diphosphate kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060418 NCBI Caenorhabditis elegans F55A3.6 (F55A3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000019268 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10786700:10793102:-1 11/11 None
SNAP00000019259 ENSEMBL cdna:SNAP chromosome:CEL140:I:10790236:10793509:-1 11/11 None
F55A3.6 ENSEMBL cdna:known chromosome:CEL140:I:10792121:10792912:-1 gene:F55A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10792051-10792843(-) 100.0 100.0
Public Domain and Genome References
Gene Title nucleoside diphosphate kinase
Ensembl F55A3.6
Entrez Gene 186271 Entrez gene
SwissProt Q9N5S1 EMBL-EBI
WormBase CE17115 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6183 GTP biosynthesis inferred from electronic annotation QuickGO AmiGO
6228 UTP biosynthesis inferred from electronic annotation QuickGO AmiGO
6241 CTP biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4550 nucleoside diphosphate kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39837 Hypothetical protein F55A3.6 [Caenorhabditis elegans] ref|NP_492819.1| F55A3.6 [Caenorhabditis elegans] 1.0E-64
blast AAF39837 Hypothetical protein F55A3.6 [Caenorhabditis elegans] ref|NP_492819.1| F55A3.6 [Caenorhabditis elegans] 4.0E-61
blast AAF39836 Hypothetical protein F55A3.5 [Caenorhabditis elegans] ref|NP_492818.1| F55A3.5 [Caenorhabditis elegans] 6.0E-58
blast AAF39837 Hypothetical protein F55A3.6 [Caenorhabditis elegans] ref|NP_492819.1| F55A3.6 [Caenorhabditis elegans] 5.0E-52
blast AAF39836 Hypothetical protein F55A3.5 [Caenorhabditis elegans] ref|NP_492818.1| F55A3.5 [Caenorhabditis elegans] 2.0E-50
blast CAB05581 Hypothetical protein R05H10.5 [Caenorhabditis elegans] ref|NP_497078.1| R05H10.5 [Caenorhabditis elegans] sp|O62327|GPX2_CAEEL Probable glutathione peroxidase R05H10.5 1.0E-16
blast CAE58974 Hypothetical protein CBG02247 [Caenorhabditis briggsae] 9.0E-16
blast AAH77684 MGC89902 protein [Xenopus tropicalis] ref|NP_001005140.1| MGC89902 protein [Xenopus tropicalis] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 4.7E-18
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 4.7E-18
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 2.0E-7
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 4.0E-17
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 3.6E-8
Sequence
Target Sequence 
>C. ELEGANS:191974_AT
tctttcgcaggcccacttggataaggaaaagctcgtcatacttgtcaaagaagacgagaa
aatgaattctatgcacaaggacaaaccattcttcccattgcttatcgattacatgagctc
tggaccagtcgtcgcgatgctctgggaaggatgtgacgtcgtgaagagagctcgggttat
tctcggagaggaacttgaagttggggaatttcgatcaattttctatgaccttgtcgttcg
tgatactcacaaaggatgccactgctctgattctgtggcgtcagccaaccgagaatatgt
gctctggttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCGCAGGCCCACTTGGATAAG 474 615 27 Antisense
GGAAAAGCTCGTCATACTTGTCAAA 183 529 51 Antisense
TGCTCTGGGAAGGATGTGACGTCGT 85 581 164 Antisense
GTGACGTCGTGAAGAGAGCTCGGGT 197 483 179 Antisense
GAGCTCGGGTTATTCTCGGAGAGGA 164 387 194 Antisense
CGATCAATTTTCTATGACCTTGTCG 395 247 238 Antisense
TGACCTTGTCGTTCGTGATACTCAC 623 569 252 Antisense
TACTCACAAAGGATGCCACTGCTCT 273 645 270 Antisense
CACTGCTCTGATTCTGTGGCGTCAG 199 199 286 Antisense
TTCTGTGGCGTCAGCCAACCGAGAA 427 693 297 Antisense
ACCGAGAATATGTGCTCTGGTTCGA 680 87 314 Antisense
Sequence Source Affymetrix Proprietary Database