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[191970_at] C2H2-type zinc finger protein

Description C34H3.2 /REP_DB=WormBase Gene ID /WP=CE23571 /TR=Q9N5X6 /GB=AAF39763.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger protein
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 81      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 456
(2.6)
P 		215.8
(-3)
P 		215.9
(-3)
P 		471
(3)
P 		255
B 336.2
(1.1)
P 		260.3
(-1.7)
P 		223.1
(-3)
P 		390.1
(3)
P 		167
C 412.9
(1.2)
P 		202.7
(-3)
P 		260
(-1.9)
P 		504.1
(3)
P 		301
avr 401.7
(1.6) 		226.3
(-3) 		233
(-2.8) 		455.1
(3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 410.3
(3)
P 		305.1
(0.3)
P 		231
(-1.6)
P 		175.2
(-3)
P 		280.2
(-0.3)
P 		334
(1.1)
P 		235
B 486.9
(3)
P 		247.1
(-1.6)
P 		171.9
(-3)
P 		256.3
(-1.4)
P 		223.5
(-2)
P 		271.1
(-1.1)
P 		315
C 282.7
(2.5)
P 		261.7
(1.1)
P 		223.3
(-1.5)
P 		289.5
(3)
P 		201
(-3)
P 		256.5
(0.8)
P 		89
avr 393.3
(3) 		271.3
(-1) 		208.7
(-3) 		240.3
(-2) 		234.9
(-2.1) 		287.2
(-0.4) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 166
(3)
P 		46.8
(-3)
P 		56.4
(-2.5)
P 		68.9
(-1.9)
P 		119
B 107.2
(3)
P 		64.3
(-1.6)
P 		51.7
(-3)
P 		83.1
(0.4)
P 		56
C 136.7
(3)
P 		58.3
(-3)
P 		90.6
(-0.5)
P 		85
(-1)
P 		78
avr 136.6
(3) 		56.5
(-3) 		66.2
(-2.3) 		79
(-1.3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 75.6
(-0.1)
P 		108.5
(3)
P 		50.3
(-2.4)
P 		44.4
(-3)
P 		84.6
(0.8)
P 		81.3
(0.5)
P 		64
B 169.4
(3)
P 		82.3
(-1.1)
P 		41.7
(-3)
P 		67.9
(-1.8)
P 		90.8
(-0.7)
P 		101.1
(-0.2)
P 		128
C 104.8
(3)
P 		79.9
(-0.1)
P 		56.8
(-3)
P 		58.2
(-2.8)
P 		65
(-2)
P 		85.9
(0.6)
P 		48
avr 116.6
(3) 		90.2
(0.6) 		49.6
(-3) 		56.8
(-2.4) 		80.1
(-0.3) 		89.4
(0.6) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16221
Sequence Type Exemplar sequence
Representative Public ID C34H3.2 NCBI
Target Description C34H3.2 /REP_DB=WormBase Gene ID /WP=CE23571 /TR=Q9N5X6 /GB=AAF39763.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076631 NCBI Caenorhabditis elegans Drosophila ODD-skipped-like family member (odd-2) (odd-2) mRNA, complete cds. 11/11 None
SNAP00000041177 ENSEMBL cdna:SNAP chromosome:CEL140:X:6159603:6160323:-1 11/11 None
GENEFINDER00000041179 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6159603:6160479:-1 11/11 None
C34H3.2 ENSEMBL cdna:known chromosome:CEL140:X:6159603:6160443:-1 gene:C34H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6159602-6160443(-) 100.0 100.0
Public Domain and Genome References
Gene Title C2H2-type zinc finger protein
Gene Symbol odd-2
Ensembl C34H3.2
Entrez Gene 183219 Entrez gene
SwissProt Q9N5X6 EMBL-EBI
WormBase CE23571 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39763 Drosophila odd-skipped-like protein 2 [Caenorhabditis elegans] ref|NP_509032.1| Drosophila ODD-skipped-like family member (odd-2) [Caenorhabditis elegans] 1.0E-124
blast AAF39763 Drosophila odd-skipped-like protein 2 [Caenorhabditis elegans] ref|NP_509032.1| Drosophila ODD-skipped-like family member (odd-2) [Caenorhabditis elegans] 1.0E-109
blast CAE68879 Hypothetical protein CBG14844 [Caenorhabditis briggsae] 8.0E-96
blast CAE68879 Hypothetical protein CBG14844 [Caenorhabditis briggsae] 9.0E-96
blast CAE68879 Hypothetical protein CBG14844 [Caenorhabditis briggsae] 2.0E-83
blast AAT94443 RE48009p [Drosophila melanogaster] gb|AAF51085.1| CG3851-PA [Drosophila melanogaster] ref|NP_722922.1| CG3851-PA [Drosophila melanogaster] sp|P23803|ODD_DROME Odd-skipped protein 6.0E-41
blast AAT94443 RE48009p [Drosophila melanogaster] gb|AAF51085.1| CG3851-PA [Drosophila melanogaster] ref|NP_722922.1| CG3851-PA [Drosophila melanogaster] sp|P23803|ODD_DROME Odd-skipped protein 8.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.6E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.6E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.6E-6
Sequence
Target Sequence 
>C. ELEGANS:191970_AT
ttgacttcactcacatggctgattcaattgaatctgaacagaagatcaaagaagaaagtg
tgtctccaaaaatgtccccgacgctcactactgcagccgttcgaccatttgttccttacg
atcaaccatggttcatgatccctggacgtggaaggactactggccgagcagcccgaccaa
agaaggaattcatctgcaaatattgtgatcgtcacttcaccaagtcttacaacctcctga
tccatgaaaggacacatactgatgagcgaccatactcgtgtgatgtttgtggaaaagcat
tccgtcgtcaggatcatcttagagaccacaagtatatccaccaaaaggacaggccattca
aatgcgaaatctgtgggaaaggattctgccaatcaagaactctcctcgtccaccgtgcaa
cacatgatccaaaccgacacagtattggagctccagttgtaccaatcaaaagtgaaacac
cactccctgaactggatccacgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACTTCACTCACATGGCTGATTC 208 705 194 Antisense
GACCATTTGTTCCTTACGATCAACC 602 383 296 Antisense
ACCATGGTTCATGATCCCTGGACGT 224 85 318 Antisense
GACGTGGAAGGACTACTGGCCGAGC 255 377 338 Antisense
GTGATCGTCACTTCACCAAGTCTTA 85 485 398 Antisense
TCTTACAACCTCCTGATCCATGAAA 175 617 418 Antisense
GATGAGCGACCATACTCGTGTGATG 659 411 454 Antisense
AGCATTCCGTCGTCAGGATCATCTT 502 77 489 Antisense
TTCTGCCAATCAAGAACTCTCCTCG 34 695 577 Antisense
ACCGACACAGTATTGGAGCTCCAGT 154 89 626 Antisense
CACTCCCTGAACTGGATCCACGAGT 488 197 674 Antisense
Sequence Source Affymetrix Proprietary Database