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[191969_at] 7TM chemoreceptor, srx family

Description C44B12.4 /REP_DB=WormBase Gene ID /WP=CE16920 /TR=O44143 /GB=AAB88327.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven transmembrane receptor
Cluster 6grp_total > 50      4grp_total > 28      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 79
(3)
A 		69.7
(2.2)
A 		75.9
(2.7)
M 		8.5
(-3)
A 		71
B 82.3
(1.6)
A 		101
(3)
A 		18.8
(-3)
A 		95.1
(2.6)
A 		82
C 86.7
(-2.5)
A 		122.1
(-0.5)
A 		76.8
(-3)
M 		187
(3)
A 		110
avr 82.7
(0.8) 		97.6
(3) 		57.2
(-3) 		96.9
(2.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 100.1
(3)
A 		63.5
(-1.2)
A 		71.7
(-0.2)
P 		69.5
(-0.5)
P 		52.3
(-2.5)
A 		47.6
(-3)
A 		53
B 69.6
(1.4)
M 		67.2
(1.2)
A 		79.8
(2.6)
P 		83.7
(3)
A 		49.6
(-0.8)
A 		29.9
(-3)
A 		54
C 61.2
(0.1)
A 		61.3
(0.1)
A 		70.8
(0.8)
A 		99.4
(3)
P 		20.4
(-3)
A 		38.3
(-1.6)
A 		79
avr 77
(2.1) 		64
(0.3) 		74.1
(1.7) 		84.2
(3) 		40.8
(-2.7) 		38.6
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 28.8
(3)
A 		15.1
(0)
A 		19.9
(1.1)
M 		1.3
(-3)
A 		28
B 26.2
(3)
A 		24.9
(2.6)
A 		4.4
(-3)
A 		20.3
(1.4)
A 		22
C 28.7
(-1.6)
A 		35.1
(3)
A 		26.8
(-3)
M 		31.5
(0.4)
A 		8
avr 27.9
(3) 		25
(1.4) 		17
(-3) 		17.7
(-2.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.5
(0.8)
A 		22.6
(3)
A 		15.6
(-0.8)
P 		17.6
(0.3)
P 		15.8
(-0.7)
A 		11.6
(-3)
A 		11
B 24.2
(3)
M 		22.4
(2.2)
A 		19.4
(0.8)
P 		22.2
(2.1)
A 		20.1
(1.1)
A 		11.1
(-3)
A 		13
C 22.7
(3)
A 		18.7
(1.5)
A 		18
(1.2)
A 		20
(2)
P 		6.6
(-3)
A 		12.8
(-0.7)
A 		16
avr 21.8
(3) 		21.2
(2.6) 		17.7
(0.5) 		19.9
(1.9) 		14.2
(-1.6) 		11.8
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11047
Sequence Type Exemplar sequence
Representative Public ID C44B12.4 NCBI
Target Description C44B12.4 /REP_DB=WormBase Gene ID /WP=CE16920 /TR=O44143 /GB=AAB88327.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027893 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-14) (srx-14) mRNA, complete cds. 11/11 None
GENEFINDER00000003004 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1111435:1118666:-1 11/11 None
C44B12.8 ENSEMBL cdna:known chromosome:CEL140:IV:1111462:1114820:-1 gene:C44B12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1111467-1118672(-) 96.92 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-14
Ensembl C44B12.8
Entrez Gene 3564967 Entrez gene
SwissProt Q7KPX1 EMBL-EBI
WormBase CE36428 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32512 hypothetical protein C44B12.4 - Caenorhabditis elegans 0.0
blast NP_500040 Serpentine Receptor, class X family member (srx-13) [Caenorhabditis elegans] gb|AAS47681.1| Serpentine receptor, class x protein 13 [Caenorhabditis elegans] 1.0E-156
blast NP_001023064 Serpentine Receptor, class X family member (srx-14) [Caenorhabditis elegans] gb|AAS47682.1| Serpentine receptor, class x protein 14 [Caenorhabditis elegans] 1.0E-150
blast T32512 hypothetical protein C44B12.4 - Caenorhabditis elegans 1.0E-140
blast CAE63859 Hypothetical protein CBG08421 [Caenorhabditis briggsae] 1.0E-134
blast NP_500040 Serpentine Receptor, class X family member (srx-13) [Caenorhabditis elegans] gb|AAS47681.1| Serpentine receptor, class x protein 13 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023064.1 6 37-59,72-94,117-139,151-173,205-227,240-262
C44B12.8 6 37-59,72-94,117-139,151-173,205-227,240-262
GENEFINDER00000003004 13 26-48,69-91,101-123,144-163,196-218,389-411,466-485,498-520,543-565,577-599,631-653,666-688,731-750
Sequence
Target Sequence 
>C. ELEGANS:191969_AT
atttggtctcacattttgctcagtttatgctctctgttgtccgtacacattccatccaga
aatcaatcgatattctcccgccaaaactgcattttctgcctaattttcatattttctctg
agctttttcgaaattggcccactttttgcctacgagacctgctttatcgcctaccagcct
gccacgtggcaatggtcggcgcctacaaaaaaatcctgtgccacctacaggcttctggtg
ctccagctgctcagtgaccttctgctcgtggttactgtagttggaaactgcgccacatgg
attttcgcagtggtcaaaaggaaaaatttgagaaatcctaaagaattccggctattttta
atgattttcgctagaaatttaggatttttgattttcgccacattatcaagcttttgcact
ggtttggttaagcagcaatggaaaaaatatgcactcaccagcctgagttggcaggtttat
cacctttttgacaggcttcaggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGGTCTCACATTTTGCTCAGTT 456 17 1432 Antisense
GCTCAGTTTATGCTCTCTGTTGTCC 392 301 1449 Antisense
AACTGCATTTTCTGCCTAATTTTCA 257 141 1516 Antisense
TCGAAATTGGCCCACTTTTTGCCTA 493 601 1559 Antisense
TTGCCTACGAGACCTGCTTTATCGC 259 699 1577 Antisense
AAAATCCTGTGCCACCTACAGGCTT 433 133 1641 Antisense
ACCTTCTGCTCGTGGTTACTGTAGT 71 1 1688 Antisense
GAAACTGCGCCACATGGATTTTCGC 508 357 1715 Antisense
TTCGCCACATTATCAAGCTTTTGCA 570 697 1825 Antisense
TATGCACTCACCAGCCTGAGTTGGC 572 655 1879 Antisense
TCACCTTTTTGACAGGCTTCAGGCC 468 623 1911 Antisense
Sequence Source Affymetrix Proprietary Database