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[191968_at] UDP-glucuronosyltransferase

Description T19H12.11 /REP_DB=WormBase Gene ID /WP=CE13772 /TR=O01618 /GB=AAC69034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 39      4grp_total > 25      6grp_cgc > 88      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 28.8
(-1.7)
A 		12
(-3)
A 		78.8
(2.3)
A 		88
(3)
A 		76
B 20.2
(-3)
A 		51.4
(0.5)
A 		31.5
(-1.7)
A 		73.7
(3)
A 		54
C 50.1
(-2.6)
A 		111.6
(3)
A 		45.6
(-3)
A 		86.7
(0.7)
A 		66
avr 33
(-3) 		58.3
(0) 		52
(-0.7) 		82.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 83.3
(3)
A 		51.8
(0.1)
A 		18.2
(-3)
A 		66.6
(1.5)
A 		72.9
(2)
A 		70.9
(1.9)
A 		65
B 57.3
(0.2)
A 		56.1
(-0)
A 		41.2
(-3)
A 		44
(-2.4)
A 		71.4
(3)
A 		51.3
(-1)
A 		30
C 24.1
(-3)
A 		61.7
(1.3)
A 		27.3
(-2.6)
A 		48
(-0.3)
A 		76.7
(3)
P 		43.7
(-0.8)
A 		53
avr 54.9
(0.5) 		56.5
(0.7) 		28.9
(-3) 		52.9
(0.2) 		73.7
(3) 		55.3
(0.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 10.5
(-0.4)
A 		2.6
(-3)
A 		20.6
(3)
A 		12.9
(0.4)
A 		18
B 6.4
(-3)
A 		12.7
(1.1)
A 		7.3
(-2.4)
A 		15.7
(3)
A 		9
C 16.6
(-2.3)
A 		32.1
(3)
A 		15.9
(-2.6)
A 		14.6
(-3)
A 		18
avr 11.2
(-3) 		15.8
(3) 		14.6
(1.4) 		14.4
(1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.4
(0.8)
A 		18.4
(1.8)
A 		4
(-3)
A 		16.9
(1.3)
A 		22
(3)
A 		17.3
(1.4)
A 		18
B 19.9
(0.1)
A 		18.7
(-0.3)
A 		10
(-3)
A 		11.7
(-2.5)
A 		29
(3)
A 		19.1
(-0.1)
A 		19
C 8.9
(-2.4)
A 		18.8
(1)
A 		7
(-3)
A 		9.7
(-2.1)
A 		24.8
(3)
P 		14.6
(-0.4)
A 		18
avr 14.7
(-0.5) 		18.6
(0.8) 		7
(-3) 		12.8
(-1.1) 		25.3
(3) 		17
(0.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15281
Sequence Type Exemplar sequence
Representative Public ID T19H12.11 NCBI
Target Description T19H12.11 /REP_DB=WormBase Gene ID /WP=CE13772 /TR=O01618 /GB=AAC69034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071912 NCBI Caenorhabditis elegans T19H12.11 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
T19H12.11 ENSEMBL cdna:known chromosome:CEL140:V:4898031:4899378:-1 gene:T19H12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4898030-4899378(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-10
Ensembl T19H12.11
Entrez Gene 188619 Entrez gene
WormBase CE38548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
blast AAZ94736 Udp-glucuronosyltransferase protein 10 [Caenorhabditis elegans] 0.0
blast T34459 hypothetical protein T19H12.11 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504313.2 2 7-29,494-516
T19H12.11 1 375-397
Sequence
Target Sequence 
>C. ELEGANS:191968_AT
agagactcccaaaaaatgttcacttgaagaaatgggttccacagccttctttgcttgccg
acaaacgtgtgaaattatttgttacccatggaggactgggaagtacaatggaagttgctt
acactggaaaaccagctctctccgttccaatcttcggagatcaaccagaaaatgcagata
tgctcgcaagacacggaggagctattgcttatgacaaatttgatttggcgaatggagaaa
agctgacaaaaaccgtgagggaaatggtgacaaatccgaaattttccaaaaatgcagaag
ccctccgtgatgtgctcctaaaacaaccgattgatccaaaaatgaatttgatgaaacatc
tagagtttgccatggaatttccaaaccatcgctctcaagttcccgctatcaataaattgg
gttggattgcacattactatctggatgtcattgcattcctcacactcgttgtagttggat
ttctgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGACTCCCAAAAAATGTTCACTT 151 67 707 Antisense
TGCTTGCCGACAAACGTGTGAAATT 104 579 758 Antisense
GTGAAATTATTTGTTACCCATGGAG 346 433 775 Antisense
CTCTCTCCGTTCCAATCTTCGGAGA 336 231 842 Antisense
CCTCCGTGATGTGCTCCTAAAACAA 319 265 1008 Antisense
GCTCCTAAAACAACCGATTGATCCA 425 293 1020 Antisense
TGGAATTTCCAAACCATCGCTCTCA 308 547 1079 Antisense
CTCTCAAGTTCCCGCTATCAATAAA 164 231 1098 Antisense
GGGTTGGATTGCACATTACTATCTG 499 495 1125 Antisense
TCTGGATGTCATTGCATTCCTCACA 597 607 1146 Antisense
ACTCGTTGTAGTTGGATTTCTGTAT 12 101 1170 Antisense
Sequence Source Affymetrix Proprietary Database