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[191967_s_at]

Description F22D6.3 /REP_DB=WormBase Gene ID /WP=CE05684 /TR=SW:Q19722 /GB=CAA95808.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=asparaginyl-tRNA synthetase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 66      6grp_total > 50      4grp_total > 58      6grp_cgc > 20      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2338
1 2 3 4 range
A 2032.9
(-1.5)
P 		3045.2
(1.5)
P 		3562.7
(3)
P 		1537.3
(-3)
P 		2025
B 2442
(0)
P 		2720.9
(0.8)
P 		3502.7
(3)
P 		1362
(-3)
P 		2141
C 2104.9
(-0.1)
P 		2853.9
(2.3)
P 		3077.2
(3)
P 		1224.6
(-3)
P 		1853
avr 2193.3
(-0.6) 		2873.3
(1.5) 		3380.9
(3) 		1374.6
(-3) 		2006

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 1738.8
(2.5)
P 		1547.5
(-1.7)
P 		1568.1
(-1.2)
P 		1762.6
(3)
P 		1486.7
(-3)
P 		1668.9
(1)
P 		276
B 1607.1
(1.1)
P 		1669.6
(3)
P 		1584.7
(0.4)
P 		1538.8
(-1.1)
P 		1477.1
(-3)
P 		1540.2
(-1)
P 		193
C 1772
(1.6)
P 		1449.8
(-3)
P 		1870.7
(3)
P 		1720.7
(0.9)
P 		1550.4
(-1.6)
P 		1484.8
(-2.5)
P 		421
avr 1706
(3) 		1555.6
(-1.5) 		1674.5
(2.1) 		1674
(2) 		1504.7
(-3) 		1564.6
(-1.2) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 866
1 2 3 4 range
A 740.2
(1.4)
P 		661
(0.7)
P 		931.4
(3)
P 		225
(-3)
P 		706
B 778.7
(2.6)
P 		672
(1.4)
P 		811.7
(3)
P 		290.2
(-3)
P 		522
C 696.8
(0.4)
P 		820.5
(1.3)
P 		1072.5
(3)
P 		206.5
(-3)
P 		866
avr 738.6
(1.3) 		717.8
(1.1) 		938.5
(3) 		240.6
(-3) 		698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 320.5
(-3)
P 		550.4
(3)
P 		341.5
(-2.5)
P 		447
(0.3)
P 		448.6
(0.3)
P 		406.3
(-0.8)
P 		230
B 559.2
(1.9)
P 		555.8
(1.8)
P 		384.8
(-3)
P 		407.6
(-2.4)
P 		600.1
(3)
P 		574.4
(2.3)
P 		215
C 656.8
(3)
P 		442.4
(-1.1)
P 		476.1
(-0.5)
P 		346
(-3)
P 		501.7
(0)
P 		497
(-0.1)
P 		311
avr 512.2
(2.8) 		516.2
(3) 		400.8
(-3) 		400.2
(-3) 		516.8
(3) 		492.6
(1.8) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191967_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1198
Sequence Type Exemplar sequence
Representative Public ID F22D6.3 NCBI
Target Description F22D6.3 /REP_DB=WormBase Gene ID /WP=CE05684 /TR=SW:Q19722 /GB=CAA95808.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=asparaginyl-tRNA synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026234 NCBI Caenorhabditis elegans asparagiNyl tRNA Synthetase family member (nrs-1) (nrs-1) mRNA, complete cds. 11/11 None
SNAP00000037649 ENSEMBL cdna:SNAP chromosome:CEL140:I:7096322:7098189:-1 11/11 None
GENEFINDER00000037659 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7096322:7098189:-1 11/11 None
F22D6.3a.1 ENSEMBL cdna:known chromosome:CEL140:I:7096170:7098196:-1 gene:F22D6.3 11/11 None
F22D6.3a.2 ENSEMBL cdna:known chromosome:CEL140:I:7096170:7098194:-1 gene:F22D6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NR_002344 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7096252-7098120(-) 100.0 100.0
Public Domain and Genome References
Ensembl F22D6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95808 Hypothetical protein F22D6.3a [Caenorhabditis elegans] ref|NP_001021405.1| asparagiNyl tRNA Synthetase family member (nrs-1) [Caenorhabditis elegans] sp|Q19722|SYNC_CAEEL Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase) (AsnRS) 0.0
blast CAE73099 Hypothetical protein CBG20478 [Caenorhabditis briggsae] 0.0
blast AAA27849 63kd antigen 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004365 EMBL-EBI OB-fold nucleic acid binding domain 3.3E-21
Pfam IPR004364 EMBL-EBI tRNA synthetase, class II (D, K and N) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191967_S_AT
gaatgcgcttttatcactttcgatcaacttatggatcgcattgaggctcttgtttgtgat
actgttgatcggcttcttgcagatccagtcaccaaatcgttgatcgagttcgtgaacccg
ggatataaggcaccagcccgaccattcaagagaatgccatacaaggaagcaatcgaatgg
cttcagaagaatgatgttcgcaacgagatgggagaaaagtttgtgtacggtgaagatatt
gctgaagctgctgagagaagaatgactgataccattggagtgccaattcttctcaaccgt
ttcccacatggaatcaaagccttctacatgccacgctgtgcagacgataacgagttgacc
gagtccgtagatcttttgatgccaggagttggagaaatcgttggaggatcaatgcgtatc
tggaaggaagatcagttgttggctgcatttgagaaaggaggacttgactctaaaaactat
tactggtacatggatcaacggaaatacggaagtgtaccacatggtggatatggattggga
ctggagcgtttcatctgctggttgaccgacaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGCTTTTATCACTTTCGATC 289 331 1021 Antisense
GGATCGCATTGAGGCTCTTGTTTGT 182 513 1053 Antisense
GTGATACTGTTGATCGGCTTCTTGC 319 485 1076 Antisense
GCAGATCCAGTCACCAAATCGTTGA 49 313 1099 Antisense
GAACCCGGGATATAAGGCACCAGCC 62 331 1134 Antisense
TTGGAGTGCCAATTCTTCTCAACCG 641 707 1295 Antisense
GGAATCAAAGCCTTCTACATGCCAC 548 533 1330 Antisense
TACATGCCACGCTGTGCAGACGATA 481 643 1345 Antisense
GTTGACCGAGTCCGTAGATCTTTTG 13 439 1374 Antisense
ATTGGGACTGGAGCGTTTCATCTGC 593 3 1554 Antisense
TCATCTGCTGGTTGACCGACACCAA 290 621 1571 Antisense
Sequence Source Affymetrix Proprietary Database