[Home] | [Total List]

[191963_at] CMP-sialic acid transporter

Description M02B1.1 /REP_DB=WormBase Gene ID /WP=CE12312 /TR=SW:Q93890 /GB=CAB05329.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=CMP-sialic acid transporter
Cluster 6grp_total > 07      4grp_total > 48      6grp_cgc > 20      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 19.4
(-3)
A 		85.9
(1)
A 		118.6
(3)
A 		51.9
(-1)
A 		99
B 45.6
(-3)
A 		84
(1.2)
A 		100
(3)
A 		46.9
(-2.9)
A 		54
C 76.4
(-1.1)
A 		121.6
(2.4)
A 		128.6
(3)
A 		52.5
(-3)
A 		76
avr 47.1
(-3) 		97.2
(1.4) 		115.7
(3) 		50.4
(-2.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 86.1
(3)
A 		13.2
(-2.9)
A 		41.2
(-0.6)
A 		11.4
(-3)
A 		13.8
(-2.8)
A 		33.3
(-1.2)
A 		75
B 55
(3)
A 		50.7
(2.4)
A 		52.8
(2.7)
A 		41.3
(1.2)
A 		9.7
(-3)
A 		49.4
(2.3)
A 		45
C 77.9
(3)
A 		68.7
(2)
A 		52.6
(0.3)
A 		78.1
(3)
A 		21.6
(-3)
A 		42.4
(-0.8)
A 		57
avr 73
(3) 		44.2
(0) 		48.9
(0.5) 		43.6
(-0) 		15
(-3) 		41.7
(-0.2) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 7
(-3)
A 		18.6
(-0.1)
A 		31
(3)
A 		7.6
(-2.9)
A 		24
B 14.5
(-1)
A 		20.8
(1.9)
A 		23.2
(3)
A 		10
(-3)
A 		13
C 25.3
(-0.3)
A 		35
(1.4)
A 		44.8
(3)
A 		8.8
(-3)
A 		36
avr 15.6
(-1.3) 		24.8
(1) 		33
(3) 		8.8
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.9
(3)
A 		4.7
(-2.2)
A 		9
(-0.2)
A 		2.9
(-3)
A 		4.2
(-2.4)
A 		8.1
(-0.6)
A 		13
B 19.1
(3)
A 		16.9
(2.1)
A 		12.8
(0.5)
A 		10.9
(-0.3)
A 		4
(-3)
A 		18.4
(2.7)
A 		15
C 28.9
(3)
A 		21
(0.8)
A 		13.4
(-1.2)
A 		15.7
(-0.6)
A 		7
(-3)
A 		14.2
(-1)
A 		22
avr 21.3
(3) 		14.2
(0.4) 		11.7
(-0.6) 		9.8
(-1.3) 		5.1
(-3) 		13.6
(0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8997
Sequence Type Exemplar sequence
Representative Public ID M02B1.1 NCBI
Target Description M02B1.1 /REP_DB=WormBase Gene ID /WP=CE12312 /TR=SW:Q93890 /GB=CAB05329.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=CMP-sialic acid transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070046 NCBI Caenorhabditis elegans SuRFace antigenicity abnormal family member (srf-3) (srf-3) mRNA, complete cds. 11/11 None
M02B1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12850645:12853784:1 gene:M02B1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024381 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024392 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031741 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12850650-12852662(+) 98.72 100.0
Public Domain and Genome References
Gene Title CMP-sialic acid transporter
Gene Symbol srf-3
Ensembl M02B1.1
Entrez Gene 187393 Entrez gene
SwissProt Q93890 EMBL-EBI
WormBase CE37656 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14427_AT nucleotide-sugar transporter family protein at
ATGENOME1:15877_AT nucleotide-sugar transporter family protein at
CANINE:1602636_AT solute carrier family 35 (UDP-galactose transporter), member A2 cfa
CANINE_2:CFA.8465.1.S1_AT solute carrier family 35 (UDP-galactose transporter), member A2 cfa
CANINE_2:CFAAFFX.24016.1.S1_AT solute carrier family 35 (UDP-galactose transporter), member A2 cfa
CANINE:1582626_AT solute carrier family 35 (UDP-galactose transporter), member A2 cfa
CANINE_2:CFA.3457.1.S1_AT solute carrier family 35 (UDP-galactose transporter), member A2 cfa
DROSOPHILA_2:1639215_AT dm
DROSGENOME1:144045_AT dm
HG-U133A:209326_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133_PLUS_2:209326_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-FOCUS:209326_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133A_2:209326_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133_PLUS_2:207440_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133A:207440_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133A_2:207440_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HU35KSUBC:RC_T60441_F_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HU35KSUBC:RC_R01143_F_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HUGENEFL:D88146_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HUGENEFL:D84454_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133A:207439_S_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133_PLUS_2:207439_S_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U133A_2:207439_S_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
U133_X3P:G5032210_3P_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
U133_X3P:G5032210_3P_A_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
U133_X3P:G1526437_3P_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
U133_X3P:207439_3P_S_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U95AV2:34229_S_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
HG-U95AV2:34230_R_AT solute carrier family 35 (UDP-galactose transporter), member A2 hs
MOUSE430A_2:1436664_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430A:1436664_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1436664_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MG-U74AV2:93558_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430A:1439433_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430A_2:1439433_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1439433_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430A:1422827_X_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430A_2:1422827_X_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1422827_X_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430A:1432533_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430A_2:1432533_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1432533_A_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430B:1453858_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1453858_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOE430B:1457024_X_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MOUSE430_2:1457024_X_AT solute carrier family 35 (UDP-galactose transporter), member 2 mm
MU19KSUBA:TC16161_AT Solute carrier family 35 (UDP-galactose transporter), member 2, mRNA (cDNA clone MGC:46966 IMAGE:4187325) mm
MU19KSUBB:TC29503_AT Solute carrier family 35 (UDP-galactose transporter), member 2, mRNA (cDNA clone MGC:46966 IMAGE:4187325) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03205 Hypothetical protein M02B1.1 [Caenorhabditis elegans] emb|CAB05329.3| Hypothetical protein M02B1.1 [Caenorhabditis elegans] ref|NP_502447.2| SuRFace antigenicity abnormal family member (srf-3) [Caenorhabditis elegans] sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 (Surface antigenicity abnormal 3) 1.0E-173
blast CAE56616 Hypothetical protein CBG24372 [Caenorhabditis briggsae] 1.0E-166
blast EAL31692 GA15422-PA [Drosophila pseudoobscura] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502447.2 8 32-54,103-125,134-151,161-183,195-214,234-256,263-280,285-304
M02B1.1 8 32-54,103-125,134-151,161-183,195-214,234-256,263-280,285-304
Sequence
Target Sequence 
>C. ELEGANS:191963_AT
cattcccgccatgatctacatagttcaaaataatcttttctacgtggcagcttcacattt
agacgccgcaactttcatgataacatcacagcttaaaattttcacggcggctattttcac
ggttatcatcttgcgcagatctctgaatcgaacacaatggttcgcactagctgtattatt
tgtcggagtctctctcgttcaacttcaaggtacaaaagcaaaggaatcatctggtgaatc
tccattcgtcggattcgtagccgtcgtcgtagcatgctgtctttctggatttgctggaat
ttatttcgaaaagattctcaaaggatcagcaccagtatctctttggatgagaaatgttca
aatggcagttttctcgattccagcatcattttcggcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCCCGCCATGATCTACATAGTT 460 217 411 Antisense
TAATCTTTTCTACGTGGCAGCTTCA 651 635 441 Antisense
GGCAGCTTCACATTTAGACGCCGCA 291 525 456 Antisense
AGACGCCGCAACTTTCATGATAACA 263 71 471 Antisense
TTCACGGCGGCTATTTTCACGGTTA 555 659 511 Antisense
GTCTCTCTCGTTCAACTTCAAGGTA 456 469 598 Antisense
CATCTGGTGAATCTCCATTCGTCGG 307 211 638 Antisense
CATTCGTCGGATTCGTAGCCGTCGT 196 217 653 Antisense
TCGTAGCATGCTGTCTTTCTGGATT 596 603 677 Antisense
GGATCAGCACCAGTATCTCTTTGGA 577 511 733 Antisense
GATTCCAGCATCATTTTCGGCGATT 403 433 786 Antisense
Sequence Source Affymetrix Proprietary Database