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[191960_at] 7TM chemoreceptor, srx family

Description K07C6.10 /REP_DB=WormBase Gene ID /WP=CE17181 /TR=O44641 /GB=AAB94252.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_total > 43      4grp_total > 47      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 13.6
(0.3)
A 		4.3
(-3)
A 		12.6
(-0)
A 		21
(3)
A 		17
B 83
(3)
A 		11
(-3)
A 		54.6
(0.6)
A 		27.2
(-1.7)
A 		72
C 67.6
(3)
A 		9.5
(-3)
A 		13
(-2.6)
A 		17.4
(-2.2)
A 		58
avr 54.7
(3) 		8.3
(-3) 		26.7
(-0.6) 		21.9
(-1.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62.1
(3)
A 		8
(-3)
A 		38.8
(0.4)
A 		8.5
(-2.9)
A 		9.4
(-2.8)
A 		10.2
(-2.8)
A 		54
B 6.4
(-2.6)
A 		6.2
(-2.7)
A 		22.2
(3)
A 		5.4
(-3)
A 		16.2
(0.9)
A 		6.2
(-2.7)
A 		17
C 6.2
(-1.4)
A 		11
(2.4)
A 		4.1
(-3)
A 		10.3
(1.8)
A 		11.8
(3)
A 		4.5
(-2.7)
A 		8
avr 24.9
(3) 		8.4
(-2.5) 		21.7
(1.9) 		8.1
(-2.6) 		12.5
(-1.2) 		7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.9
(3)
A 		0.9
(-3)
A 		3.3
(0.6)
A 		3.1
(0.3)
A 		4
B 26.5
(3)
A 		2.7
(-3)
A 		12.6
(-0.5)
A 		5.8
(-2.2)
A 		24
C 22.4
(3)
A 		2.7
(-3)
A 		4.5
(-2.5)
A 		2.9
(-2.9)
A 		20
avr 17.9
(3) 		2.1
(-3) 		6.8
(-1.2) 		3.9
(-2.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.5
(3)
A 		2.9
(-2.5)
A 		8.5
(1.1)
A 		2.2
(-3)
A 		2.8
(-2.6)
A 		2.5
(-2.8)
A 		9
B 2.2
(-2.1)
A 		2.1
(-2.2)
A 		5.4
(1.6)
A 		1.4
(-3)
A 		6.6
(3)
A 		2.3
(-2)
A 		5
C 2.3
(-0.2)
A 		3.3
(1.9)
A 		1
(-3)
A 		2.1
(-0.6)
A 		3.8
(3)
A 		1.5
(-1.9)
A 		3
avr 5.3
(3) 		2.8
(-1.4) 		5
(2.5) 		1.9
(-3) 		4.4
(1.4) 		2.1
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14968
Sequence Type Exemplar sequence
Representative Public ID K07C6.10 NCBI
Target Description K07C6.10 /REP_DB=WormBase Gene ID /WP=CE17181 /TR=O44641 /GB=AAB94252.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071683 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-67) (srx-67) mRNA, complete cds. 11/11 None
SNAP00000025760 ENSEMBL cdna:SNAP chromosome:CEL140:V:3917455:3918259:1 11/11 None
K07C6.10 ENSEMBL cdna:known chromosome:CEL140:V:3916652:3918259:1 gene:K07C6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3916651-3918259(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-67
Ensembl K07C6.10
Entrez Gene 187098 Entrez gene
SwissProt O44641 EMBL-EBI
WormBase CE38205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94252 Serpentine receptor, class x protein 67 [Caenorhabditis elegans] ref|NP_504084.2| Serpentine Receptor, class X family member (srx-67) [Caenorhabditis elegans] 1.0E-172
blast AAB94252 Serpentine receptor, class x protein 67 [Caenorhabditis elegans] ref|NP_504084.2| Serpentine Receptor, class X family member (srx-67) [Caenorhabditis elegans] 1.0E-165
blast AAB94252 Serpentine receptor, class x protein 67 [Caenorhabditis elegans] ref|NP_504084.2| Serpentine Receptor, class X family member (srx-67) [Caenorhabditis elegans] 1.0E-125
blast NP_504895 Serpentine Receptor, class X family member (srx-60) [Caenorhabditis elegans] gb|AAK72301.2| Serpentine receptor, class x protein 60 [Caenorhabditis elegans] 1.0E-122
blast NP_504895 Serpentine Receptor, class X family member (srx-60) [Caenorhabditis elegans] gb|AAK72301.2| Serpentine receptor, class x protein 60 [Caenorhabditis elegans] 1.0E-116
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 3.0E-96
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 2.0E-91
blast NP_504895 Serpentine Receptor, class X family member (srx-60) [Caenorhabditis elegans] gb|AAK72301.2| Serpentine receptor, class x protein 60 [Caenorhabditis elegans] 2.0E-88
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 1.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504084.2 6 7-29,49-67,126-148,176-195,215-237,247-269
K07C6.10 6 52-74,89-111,139-161,189-208,228-250,260-282
SNAP00000025760 4 48-70,98-117,137-159,169-191
Sequence
Target Sequence 
>C. ELEGANS:191960_AT
gcatctccatcaacagattctgtgccgtcttggtgccactgaagtatgacatatggttca
ccataaaaaatacgaaaaagattatcgcattgttgtggattgttgaaacaattattgcag
ccattttctaccagtatttgtgcaatgtgttctacttggaagaaattcatttcatacaat
tcaccagtaccgagttttgtgggatggttgcgtggtatgaggattttgtaaaaaatgctg
caatcatcgcaattattgtgtgtttggacatcacaactatacttcgagttcatcatgtta
ccaaaaaggcccgcgccaacagaggcgaggacgctaataaattctccccgagagacatcc
gtttcctccggcaaaccgtttttcaaggatcggtgtttcttctcgagttgatcacatatt
tcttcattccacaatatttccaaaatcagtggatcatatttctcggaacttcgttcatct
gggttgcaattcatgcgattgatggaatgattgtaatcgtttgcaacccagaagtcagaa
actttctcatcggaggccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTCCATCAACAGATTCTGTGC 684 309 338 Antisense
TGCCGTCTTGGTGCCACTGAAGTAT 444 563 360 Antisense
ATTGCAGCCATTTTCTACCAGTATT 628 5 451 Antisense
TATACTTCGAGTTCATCATGTTACC 634 659 615 Antisense
TCATGTTACCAAAAAGGCCCGCGCC 139 619 630 Antisense
GCCCGCGCCAACAGAGGCGAGGACG 135 285 646 Antisense
AAATTCTCCCCGAGAGACATCCGTT 504 113 676 Antisense
GGTGTTTCTTCTCGAGTTGATCACA 128 501 729 Antisense
GATCATATTTCTCGGAACTTCGTTC 510 419 789 Antisense
ACTTCGTTCATCTGGGTTGCAATTC 430 101 805 Antisense
GAAACTTTCTCATCGGAGGCCACAA 505 355 875 Antisense
Sequence Source Affymetrix Proprietary Database