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[191958_at] zinc-finger protein

Description M04B2.1 /REP_DB=WormBase Gene ID /WP=CE12384 /GEN=mep-1 /TR=Q21502 /GB=CAB01235.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 86      6grp_total > 46      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 1261
(3)
P 		856.7
(-3)
P 		880.4
(-2.6)
P 		946.4
(-1.7)
P 		404
B 1366.1
(3)
P 		1018.5
(-2)
P 		944.8
(-3)
P 		1012.3
(-2)
P 		421
C 1295
(3)
P 		1060.4
(-2)
P 		1013.3
(-3)
P 		1217.2
(1.3)
P 		282
avr 1307.4
(3) 		978.5
(-2.5) 		946.2
(-3) 		1058.6
(-1.1) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 869.1
(-2.4)
P 		1125.1
(1.1)
P 		825.8
(-3)
P 		1008.6
(-0.5)
P 		901
(-2)
P 		1261.7
(3)
P 		436
B 1078
(3)
P 		1069.4
(2.9)
P 		841.7
(-0.8)
P 		894.2
(0.1)
P 		701.9
(-3)
P 		1030.1
(2.2)
P 		376
C 1251.1
(3)
P 		979.7
(-0.2)
P 		1115
(1.4)
P 		791.8
(-2.4)
P 		736.5
(-3)
P 		1024.5
(0.4)
P 		515
avr 1066.1
(2.3) 		1058.1
(2.1) 		927.5
(-0.3) 		898.2
(-0.8) 		779.8
(-3) 		1105.4
(3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 459.1
(3)
P 		186
(-2.1)
P 		230.2
(-1.3)
P 		138.5
(-3)
P 		321
B 435.6
(3)
P 		251.5
(-2)
P 		218.9
(-2.9)
P 		215.7
(-3)
P 		220
C 428.7
(3)
P 		304.9
(-0.3)
P 		353.2
(1)
P 		205.2
(-3)
P 		224
avr 441.1
(3) 		247.5
(-1.6) 		267.4
(-1.1) 		186.5
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 160.2
(-3)
P 		400.1
(3)
P 		179.8
(-2.5)
P 		255.8
(-0.6)
P 		271.9
(-0.2)
P 		307.2
(0.7)
P 		240
B 375.1
(2.7)
P 		356
(2.1)
P 		204.4
(-3)
P 		236.8
(-1.9)
P 		285.2
(-0.3)
P 		384.1
(3)
P 		180
C 463.7
(3)
P 		298.9
(-0.2)
P 		283.8
(-0.5)
P 		159.2
(-3)
P 		238.3
(-1.4)
P 		343
(0.6)
P 		305
avr 333
(2.2) 		351.7
(3) 		222.7
(-2.8) 		217.3
(-3) 		265.1
(-0.9) 		344.8
(2.7) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8747
Sequence Type Exemplar sequence
Representative Public ID M04B2.1 NCBI
Target Description M04B2.1 /REP_DB=WormBase Gene ID /WP=CE12384 /GEN=mep-1 /TR=Q21502 /GB=CAB01235.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069772 NCBI Caenorhabditis elegans Mog interacting, Ectopic P granules family member (mep-1) (mep-1) mRNA, complete cds. 11/11 A 
SNAP00000026179 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11524614:11527489:1 11/11 None
GENEFINDER00000026185 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11524614:11527489:1 11/11 None
M04B2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11524613:11527927:1 gene:M04B2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11524619-11527495(+) 98.75 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Gene Symbol mep-1
Ensembl M04B2.1
Entrez Gene 178074 Entrez gene
SwissProt Q21502 EMBL-EBI
WormBase CE31852 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638162_S_AT dm
DROSGENOME1:154100_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3910 DNA ligase (ATP) activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01235 Hypothetical protein M04B2.1 [Caenorhabditis elegans] ref|NP_502173.2| Mog interacting, Ectopic P granules family member (mep-1) [Caenorhabditis elegans] gb|AAL27004.1| nuclear zinc finger protein [Caenorhabditis elegans] 0.0
blast CAE62104 Hypothetical protein CBG06138 [Caenorhabditis briggsae] 0.0
blast EAL31340 GA11636-PA [Drosophila pseudoobscura] 6.0E-26
Sequence
Target Sequence 
>C. ELEGANS:191958_AT
aattcgctggcagtttctcaacttctccaaaagcaaatggcagctttgaagtcgcaacaa
ggagctcaacaacttcaggctgcggtgaactccatgagaagccagaacagtcaaaagacg
ccaacacacagaactcccacgtttgtatgcgaaatttgtgatgcgtcagtgcaggaaaag
gagaagtatctacagcatcttcagactactcataagcagatggttggaaaagtgctgcag
gacatgtcgcaaggagctccactggcatgttctcgatgccgtgacagattctggacttat
gaagggttggagcggcacttggtgatgtcgcatggtctcgtcactgctgatctgctcctc
aaagcgcaaaagaaggaagacggaggtcgatgcaagacatgcggcaagaactatgcgttc
aacatgcttcaacacttggtagctgatcatcaagtgaagttgtgctcggctgaaatcatg
tactcgtgcgatgtgtgcgcgttcaaatgctcgagttatcagactctggaagcccatctc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGCTGGCAGTTTCTCAACTTC 568 177 1957 Antisense
CAGGCTGCGGTGAACTCCATGAGAA 709 207 2032 Antisense
CACAGAACTCCCACGTTTGTATGCG 671 195 2083 Antisense
GTATCTACAGCATCTTCAGACTACT 94 455 2142 Antisense
AGGACATGTCGCAAGGAGCTCCACT 18 55 2195 Antisense
GCTCCACTGGCATGTTCTCGATGCC 24 299 2212 Antisense
CTCGATGCCGTGACAGATTCTGGAC 81 233 2228 Antisense
TGGTGATGTCGCATGGTCTCGTCAC 492 553 2276 Antisense
GTACTCGTGCGATGTGTGCGCGTTC 505 459 2436 Antisense
TGCGCGTTCAAATGCTCGAGTTATC 316 583 2452 Antisense
TATCAGACTCTGGAAGCCCATCTCA 390 659 2473 Antisense
Sequence Source Affymetrix Proprietary Database