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[191956_at] aspartyl protease

Description H22K11.1 /REP_DB=WormBase Gene ID /WP=CE19495 /GEN=asp-3 /TR=Q9TXI5 /GB=AAK39240.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 18      6grp_total > 42      4grp_total > 60      6grp_cgc > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17042
1 2 3 4 range
A 19668.5
(2.2)
P 		19165.8
(2)
P 		21953.6
(3)
P 		5399.9
(-3)
P 		16554
B 19732.3
(2.5)
P 		18083.7
(1.9)
P 		20897.9
(3)
P 		5554.8
(-3)
P 		15343
C 17415.7
(3)
P 		16726.5
(2.7)
P 		17257.6
(2.9)
P 		4911.9
(-3)
P 		12504
avr 18938.8
(2.6) 		17992
(2.2) 		20036.4
(3) 		5288.9
(-3) 		14748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9666
1 2 3 4 5 6 range
A 19852.5
(3)
P 		17384.7
(0.1)
P 		19069
(2.1)
P 		18776.6
(1.7)
P 		14688.3
(-3)
P 		14787.8
(-2.9)
P 		5164
B 17759.3
(1.7)
P 		16383.9
(0.6)
P 		19337.6
(3)
P 		16219.2
(0.5)
P 		14209.7
(-1.1)
P 		11813
(-3)
P 		7525
C 16848.8
(-0.2)
P 		16304.9
(-0.6)
P 		21479.4
(3)
P 		18742.4
(1.1)
P 		16103.2
(-0.7)
P 		12734.3
(-3)
P 		8745
avr 18153.5
(1.4) 		16691.2
(0.1) 		19962
(3) 		17912.7
(1.2) 		15000.4
(-1.3) 		13111.7
(-3) 		6850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6371
1 2 3 4 range
A 7161.3
(3)
P 		4160.4
(0.2)
P 		5739.1
(1.7)
P 		790.4
(-3)
P 		6371
B 6292.5
(3)
P 		4466.2
(0.9)
P 		4842.5
(1.3)
P 		1183.7
(-3)
P 		5109
C 5765.1
(2.7)
P 		4809
(1.6)
P 		6014.8
(3)
P 		828.2
(-3)
P 		5187
avr 6406.3
(3) 		4478.5
(0.9) 		5532.1
(2) 		934.1
(-3) 		5472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2645
1 2 3 4 5 6 range
A 3659.6
(-2.9)
P 		6182.9
(3)
P 		4152.8
(-1.7)
P 		4762.2
(-0.3)
P 		4432.3
(-1.1)
P 		3600.4
(-3)
P 		2583
B 6179.4
(3)
P 		5453.5
(0.7)
P 		4695.7
(-1.7)
P 		4295.9
(-3)
P 		5773.2
(1.7)
P 		4405
(-2.7)
P 		1884
C 6245.1
(3)
P 		4975.1
(-0.1)
P 		5466.9
(1.1)
P 		3769.1
(-3)
P 		5210.8
(0.5)
P 		4262.9
(-1.8)
P 		2476
avr 5361.4
(2.3) 		5537.2
(3) 		4771.8
(-0.2) 		4275.7
(-2.2) 		5138.8
(1.3) 		4089.4
(-3) 		1448
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15980
Sequence Type Exemplar sequence
Representative Public ID H22K11.1 NCBI
Target Description H22K11.1 /REP_DB=WormBase Gene ID /WP=CE19495 /GEN=asp-3 /TR=Q9TXI5 /GB=AAK39240.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076741 NCBI Caenorhabditis elegans ASpartyl Protease family member (asp-3) (asp-3) mRNA, complete cds. 11/11 None
SNAP00000015668 ENSEMBL cdna:SNAP chromosome:CEL140:X:6791144:6792524:1 11/11 None
GENEFINDER00000015672 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6791144:6792524:1 11/11 None
H22K11.1 ENSEMBL cdna:known chromosome:CEL140:X:6791126:6792668:1 gene:H22K11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6791143-6792524(+) 100.0 100.0
Public Domain and Genome References
Gene Title aspartyl protease
Gene Symbol asp-3
Ensembl H22K11.1
Entrez Gene 180947 Entrez gene
SwissProt P55956 EMBL-EBI
WormBase CE19495 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39240 Aspartyl protease protein 3 [Caenorhabditis elegans] ref|NP_509142.1| ASpartyl Protease family member (asp-3) [Caenorhabditis elegans] sp|P55956|ASP3_CAEEL Aspartic protease 3 precursor 0.0
blast CAE65791 Hypothetical protein CBG10895 [Caenorhabditis briggsae] 0.0
blast CAC14005 aspartic protease [Ostertagia ostertagi] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 7.5E-124
Sequence
Target Sequence 
>C. ELEGANS:191956_AT
gccaatggaccaaatcttcgccaactccgccatctgcaagaatcaactattcgctttctg
gcttagccgtgacgccaacgacatcaccaacggaggagaaattaccctttgcgagaccga
tccgaaccactacgtcggaaacatcgcttgggagccactcgtctctgaggactactggag
aatcaagctcgcttcggttgtcatcgatggaaccacctacaccagcggaccaatcgactc
gattgttgacactggaacttcccttctcactggaccaactgatgtcatcaagaagatcca
acacaagatcggaggaatcccactcttcaatggagagtacgaagttgagtgcagcaagat
tccatctcttccaaacatcaccttcaacctcggaggacaaaacttcgatcttcaaggaaa
ggactacatccttcaaatgtccaacggaaacggaggatccacctgcctctctggattcat
gggaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAATGGACCAAATCTTCGCCAAC 605 277 600 Antisense
GAATCAACTATTCGCTTTCTGGCTT 619 327 639 Antisense
TTTCTGGCTTAGCCGTGACGCCAAC 544 657 654 Antisense
GAACCACTACGTCGGAAACATCGCT 432 345 723 Antisense
CCACTCGTCTCTGAGGACTACTGGA 302 275 754 Antisense
AATCAAGCTCGCTTCGGTTGTCATC 337 171 780 Antisense
TGTCATCGATGGAACCACCTACACC 207 559 798 Antisense
TGTTGACACTGGAACTTCCCTTCTC 509 563 843 Antisense
ATCGGAGGAATCCCACTCTTCAATG 636 33 907 Antisense
AGTGCAGCAAGATTCCATCTCTTCC 94 61 947 Antisense
CTGCCTCTCTGGATTCATGGGAATG 411 237 1062 Antisense
Sequence Source Affymetrix Proprietary Database