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[191955_at] Leucine Rich Repeat (2 copies)

Description F43G6.3 /REP_DB=WormBase Gene ID /WP=CE02221 /TR=Q20366 /GB=CAA90394.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster 6grp_total > 98      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 54.7
(-3)
P 		89.7
(0.4)
P 		77.8
(-0.8)
P 		117.1
(3)
A 		62
B 58.8
(0.5)
M 		58.2
(-0.5)
P 		60.2
(3)
M 		56.8
(-3)
A 		3
C 42.7
(-3)
P 		51.5
(-0.4)
A 		51.1
(-0.6)
P 		63.3
(3)
A 		21
avr 52.1
(-3) 		66.5
(0.2) 		63
(-0.6) 		79.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 91
(-0.3)
P 		34.4
(-2.4)
M 		18.4
(-3)
A 		62.8
(-1.3)
P 		161.1
(2.3)
P 		178.5
(3)
P 		160
B 44.7
(-3)
A 		46.1
(-2.9)
P 		45.9
(-2.9)
A 		63.8
(-1.8)
P 		113.7
(1.3)
P 		141.8
(3)
P 		97
C 66.9
(-2)
P 		42.2
(-3)
P 		65.1
(-2.1)
A 		59.3
(-2.3)
A 		111.6
(-0.3)
P 		196
(3)
P 		154
avr 67.5
(-1.8) 		40.9
(-3) 		43.1
(-2.9) 		62
(-2) 		128.8
(1) 		172.1
(3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 19.9
(2.3)
P 		19.5
(1.5)
P 		20.3
(3)
P 		17.1
(-3)
A 		3
B 18.8
(3)
M 		14.4
(-0.9)
P 		13.9
(-1.4)
M 		12.1
(-3)
A 		7
C 14.1
(-0.1)
P 		14.8
(0.5)
A 		17.8
(3)
P 		10.7
(-3)
A 		7
avr 17.6
(3) 		16.2
(1) 		17.3
(2.6) 		13.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 16.8
(-1.3)
P 		12.2
(-1.9)
M 		4
(-3)
A 		15.9
(-1.4)
P 		48.6
(3)
P 		43.5
(2.3)
P 		45
B 15.5
(-2.4)
A 		15.3
(-2.4)
P 		11.1
(-3)
A 		16.9
(-2.2)
P 		46.2
(2)
P 		52.9
(3)
P 		42
C 24.8
(-1.6)
P 		12.9
(-2.9)
P 		16.6
(-2.5)
A 		11.9
(-3)
A 		36.1
(-0.3)
P 		65.6
(3)
P 		54
avr 19
(-1.8) 		13.5
(-2.6) 		10.6
(-3) 		14.9
(-2.4) 		43.6
(1.6) 		54
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3540
Sequence Type Exemplar sequence
Representative Public ID F43G6.3 NCBI
Target Description F43G6.3 /REP_DB=WormBase Gene ID /WP=CE02221 /TR=Q20366 /GB=CAA90394.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064117 NCBI Caenorhabditis elegans F43G6.3 (F43G6.3) mRNA, complete cds. 11/11 None
SNAP00000023950 ENSEMBL cdna:SNAP chromosome:CEL140:II:11782892:11783991:1 11/11 None
GENEFINDER00000023964 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11782892:11783991:1 11/11 None
F43G6.3 ENSEMBL cdna:known chromosome:CEL140:II:11783114:11783971:1 gene:F43G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11783110-11783988(+) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies)
Ensembl F43G6.3
Entrez Gene 185714 Entrez gene
SwissProt Q20366 EMBL-EBI
WormBase CE36158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90394 Hypothetical protein F43G6.3 [Caenorhabditis elegans] ref|NP_496518.2| F43G6.3 [Caenorhabditis elegans] 1.0E-92
blast CAA90394 Hypothetical protein F43G6.3 [Caenorhabditis elegans] ref|NP_496518.2| F43G6.3 [Caenorhabditis elegans] 8.0E-78
blast CAA90394 Hypothetical protein F43G6.3 [Caenorhabditis elegans] ref|NP_496518.2| F43G6.3 [Caenorhabditis elegans] 1.0E-68
blast AAC69027 Hypothetical protein T19H12.2 [Caenorhabditis elegans] ref|NP_504310.1| T19H12.2 [Caenorhabditis elegans] 1.0E-36
blast CAB04265 Hypothetical protein F33H2.3 [Caenorhabditis elegans] ref|NP_493622.1| F33H2.3 [Caenorhabditis elegans] 2.0E-32
blast AAC69027 Hypothetical protein T19H12.2 [Caenorhabditis elegans] ref|NP_504310.1| T19H12.2 [Caenorhabditis elegans] 8.0E-32
blast CAB04265 Hypothetical protein F33H2.3 [Caenorhabditis elegans] ref|NP_493622.1| F33H2.3 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:191955_AT
gtggcagttattgtcgagtcccaagagcgaaacaagaccccgacacaagaagtacctatt
agccacgtcattacttctctccagcgtaaaggatattcgatcagttgtggcgaaactttg
cgttggatcgatgtctgacttctcgagggacgctctattgatcagggaaagattaaattc
gcctttcacatcacaatggctcacagaacacgctcgtctccccatcgaatcgagacttcc
cttaatcgggatttggcaactcgtcggaccgtcagtgattcgtagtgctgttatcgctca
agtgtaccgcttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCAGTTATTGTCGAGTCCCAAG 211 489 375 Antisense
AGACCCCGACACAAGAAGTACCTAT 152 69 409 Antisense
CTATTAGCCACGTCATTACTTCTCT 88 225 430 Antisense
CGATGTCTGACTTCTCGAGGGACGC 599 249 503 Antisense
GAGGGACGCTCTATTGATCAGGGAA 13 403 519 Antisense
TAAATTCGCCTTTCACATCACAATG 366 641 548 Antisense
CACAATGGCTCACAGAACACGCTCG 639 193 566 Antisense
CGAATCGAGACTTCCCTTAATCGGG 509 253 600 Antisense
GCAACTCGTCGGACCGTCAGTGATT 114 311 630 Antisense
GATTCGTAGTGCTGTTATCGCTCAA 129 433 651 Antisense
TTATCGCTCAAGTGTACCGCTTACT 610 679 665 Antisense
Sequence Source Affymetrix Proprietary Database