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[191954_at]

Description ZK328.7 /REP_DB=WormBase Gene ID /WP=CE05072 /TR=Q23468 /GB=AAA91253.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=stress-inducible protein STI1
Cluster 6grp_total > 14      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 137.6
(3)
P 		59.1
(-1.1)
A 		56.7
(-1.3)
A 		24
(-3)
A 		114
B 128.4
(3)
P 		125.2
(2.7)
A 		64
(-2.8)
A 		62
(-3)
A 		66
C 159.9
(3)
M 		84.9
(-1.4)
A 		57.6
(-3)
A 		80.9
(-1.6)
A 		102
avr 142
(3) 		89.7
(-0.6) 		59.4
(-2.7) 		55.6
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 75.8
(1.6)
A 		96.2
(3)
A 		66.2
(0.9)
A 		85.9
(2.3)
A 		70.9
(1.2)
A 		10.1
(-3)
A 		86
B 95.3
(3)
P 		87.8
(2.1)
A 		78.6
(1)
P 		81
(1.3)
A 		72
(0.3)
A 		44.1
(-3)
A 		51
C 115.5
(3)
A 		64.2
(0.1)
A 		66.5
(0.2)
A 		29.5
(-1.9)
A 		10.3
(-3)
A 		56.7
(-0.4)
A 		105
avr 95.5
(3) 		82.7
(1.7) 		70.4
(0.4) 		65.5
(-0.1) 		51.1
(-1.6) 		37
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 50.1
(3)
P 		12.8
(-1.8)
A 		14.8
(-1.5)
A 		3.5
(-3)
A 		47
B 40.9
(3)
P 		30.9
(0.8)
A 		14.8
(-2.7)
A 		13.2
(-3)
A 		28
C 52.9
(3)
M 		24.4
(-1.4)
A 		20.1
(-2)
A 		13.6
(-3)
A 		39
avr 48
(3) 		22.7
(-1) 		16.6
(-2) 		10.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14
(-0.8)
A 		34.2
(3)
A 		14.4
(-0.7)
A 		21.8
(0.7)
A 		21.4
(0.6)
A 		2.4
(-3)
A 		32
B 33.1
(3)
P 		29.2
(1.6)
A 		19.1
(-2)
P 		21.4
(-1.2)
A 		29.3
(1.6)
A 		16.4
(-3)
A 		17
C 42.8
(3)
A 		19.6
(-0.5)
A 		16.9
(-0.9)
A 		5.9
(-2.6)
A 		3.3
(-3)
A 		19
(-0.6)
A 		40
avr 30
(3) 		27.7
(2.2) 		16.8
(-1.6) 		16.4
(-1.7) 		18
(-1.1) 		12.6
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6244
Sequence Type Exemplar sequence
Representative Public ID ZK328.7 NCBI
Target Description ZK328.7 /REP_DB=WormBase Gene ID /WP=CE05072 /TR=Q23468 /GB=AAA91253.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=stress-inducible protein STI1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027822 NCBI Caenorhabditis elegans ZK328.7a (ZK328.7) mRNA, complete cds. 11/11 None
ZK328.7a ENSEMBL cdna:known chromosome:CEL140:III:6032685:6039375:-1 gene:ZK328.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175855 2 1 NM_001027822 191954_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6032683-6036852(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK328.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91253 Hypothetical protein ZK328.7a [Caenorhabditis elegans] ref|NP_001022993.1| ZK328.7a [Caenorhabditis elegans] sp|Q20255|YSY1_CAEEL Hypothetical protein ZK328.7 in chromosome III 0.0
blast T29012 hypothetical protein ZK328.7 - Caenorhabditis elegans 0.0
blast AAP68919 Hypothetical protein ZK328.7b [Caenorhabditis elegans] ref|NP_001022994.1| ZK328.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 5.1E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.04
Pfam IPR001440 EMBL-EBI TPR repeat 0.0033
Pfam IPR001440 EMBL-EBI TPR repeat 0.0055
Sequence
Target Sequence 
>C. ELEGANS:191954_AT
gaaaacttccaatccactgatcgtttcctgcttgctcaaaattttattcgaatgcatact
actgacaaatcagccattcaagctgctcttgatgaattcaatcgaatggcatttaatgcc
gatcgttcacaagttactaatgttggagcagttttcggagttgcaagaggtcatgtcctg
cttaaacaagttcagaaagcaaaaactgtgttgaagatggtgaatggaagagtttggaat
tttgatgatagtgattatttggaaaagtgttggctgatgttggctgatatttacattaat
caaaacaaaaatgatcaggctgtgacatttttggatttagtctttaagtataactgtaac
tgtttaaaagcctttgagctgtatggttatatgcgggagaaggaacagaaatatgtggag
gcttataaaatgtacgagaaagcatttatggctacaaaagaaaggaatccaggttttggc
tacaaattggcgttcacctatctcaaggcaaagcggctatttgcttgcattgaaacctgc
caaaaagtacttgatctcaatccacagtacccgaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTTCCAATCCACTGATCGTT 456 353 2737 Antisense
ATCGTTTCCTGCTTGCTCAAAATTT 20 37 2756 Antisense
AAATCAGCCATTCAAGCTGCTCTTG 463 117 2803 Antisense
GCATTTAATGCCGATCGTTCACAAG 707 305 2845 Antisense
GTTGGAGCAGTTTTCGGAGTTGCAA 270 435 2878 Antisense
GCAAGAGGTCATGTCCTGCTTAAAC 78 321 2899 Antisense
AAGTGTTGGCTGATGTTGGCTGATA 390 159 3001 Antisense
TTGGCTACAAATTGGCGTTCACCTA 37 709 3212 Antisense
GGCGTTCACCTATCTCAAGGCAAAG 315 501 3225 Antisense
CAAAGCGGCTATTTGCTTGCATTGA 252 193 3245 Antisense
ATCTCAATCCACAGTACCCGAAAAT 263 33 3290 Antisense
Sequence Source Affymetrix Proprietary Database