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[191953_at] Leucine Rich Repeat (2 copies)

Description F44E5.2 /REP_DB=WormBase Gene ID /WP=CE18677 /TR=Q9XU96 /GB=CAB05510.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster 6grp_total > 56      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.3
(-2.9)
A 		13.8
(3)
A 		3.1
(-3)
A 		6.9
(-0.9)
A 		11
B 9.7
(-1.8)
A 		33.7
(3)
A 		3.4
(-3)
A 		30.1
(2.3)
A 		30
C 10.5
(-2.2)
A 		7.7
(-3)
A 		25.7
(2.3)
A 		28.1
(3)
A 		20
avr 7.8
(-3) 		18.4
(1.6) 		10.7
(-1.7) 		21.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 15.3
(0.8)
A 		7.9
(-2)
A 		7
(-2.4)
A 		5.3
(-3)
A 		15.8
(0.9)
A 		21.3
(3)
A 		16
B 2.2
(-3)
A 		5
(-2.6)
A 		32
(1.5)
A 		10.2
(-1.8)
A 		2.5
(-3)
A 		41.8
(3)
A 		40
C 5.3
(-2.6)
A 		38
(3)
A 		4.8
(-2.7)
A 		14
(-1.1)
A 		2.9
(-3)
A 		20.9
(0.1)
A 		35
avr 7.6
(-2.9) 		17
(-0.2) 		14.6
(-0.8) 		9.8
(-2.2) 		7.1
(-3) 		28
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-1.9)
A 		3
(3)
A 		0.8
(-3)
A 		1
(-2.5)
A 		2
B 3.1
(-1.2)
A 		8.3
(3)
A 		0.8
(-3)
A 		6.4
(1.5)
A 		8
C 3.5
(-1.8)
A 		2.2
(-3)
A 		8.9
(3)
A 		4.7
(-0.8)
A 		7
avr 2.6
(-3) 		4.5
(3) 		3.5
(-0.2) 		4
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.8
(-0.7)
A 		2.8
(-0.7)
A 		1.5
(-2.7)
A 		1.3
(-3)
A 		4.8
(2.4)
A 		5.2
(3)
A 		4
B 0.8
(-3)
A 		1.7
(-2.6)
A 		7.8
(-0.2)
A 		2.7
(-2.2)
A 		1
(-2.9)
A 		15.6
(3)
A 		15
C 2
(-2.4)
A 		11.6
(3)
A 		1.2
(-2.9)
A 		2.8
(-2)
A 		1
(-3)
A 		7
(0.4)
A 		11
avr 1.9
(-3) 		5.4
(-0.2) 		3.5
(-1.7) 		2.3
(-2.7) 		2.3
(-2.7) 		9.3
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3998
Sequence Type Exemplar sequence
Representative Public ID F44E5.2 NCBI
Target Description F44E5.2 /REP_DB=WormBase Gene ID /WP=CE18677 /TR=Q9XU96 /GB=CAB05510.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064111 NCBI Caenorhabditis elegans F44E5.2 (F44E5.2) mRNA, complete cds. 11/11 None
SNAP00000031915 ENSEMBL cdna:SNAP chromosome:CEL140:II:11772429:11773944:1 11/11 None
GENEFINDER00000031920 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11766677:11773944:1 11/11 None
F44E5.2 ENSEMBL cdna:known chromosome:CEL140:II:11766677:11773944:1 gene:F44E5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11766673-11773941(+) 86.48 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies)
Ensembl F44E5.2
Entrez Gene 185735 Entrez gene
SwissProt Q9XU96 EMBL-EBI
WormBase CE18677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05510 Hypothetical protein F44E5.2 [Caenorhabditis elegans] ref|NP_496512.1| F44E5.2 [Caenorhabditis elegans] 0.0
blast CAB05510 Hypothetical protein F44E5.2 [Caenorhabditis elegans] ref|NP_496512.1| F44E5.2 [Caenorhabditis elegans] 1.0E-115
blast AAB71019 Hypothetical protein F53G2.1 [Caenorhabditis elegans] ref|NP_494284.1| F53G2.1 [Caenorhabditis elegans] 1.0E-54
blast AAK20066 Hypothetical protein F47D12.5 [Caenorhabditis elegans] ref|NP_498378.1| F47D12.5 [Caenorhabditis elegans] sp|Q09562|YR45_CAEEL Hypothetical protein F47D12.5 in chromosome III 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.043
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0051
Sequence
Target Sequence 
>C. ELEGANS:191953_AT
tggtctcaggatgtttcccaacggatgtatggcaagaaatggagcgagttgatgaacaaa
tcaagctagatttccctgggacgacagctcattgttacctactcctccatccaactttat
taggcctcgaagatgtcaagtttgataactttgtttcctacatattttatgttggaaaag
gaacaggctttcgatctttacatcatttcatagaagcacttcagaaggaaaatgatcctt
atatagattcaaaatgtggaagcatcgttagcatatggaactcaggtcaagaaattggat
gcgtaaaaatatttgttggcgtgtcgagtacggtagcacaaataaaagaggctgcaatga
tcaaggccctctctaaacacgacctcaccaataaaatagaaggttccttccttggtttat
cgaatatctggaataacaaagataaatgtcagtatggatcattctgcatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCTCAGGATGTTTCCCAACGGA 672 549 1901 Antisense
ATCAAGCTAGATTTCCCTGGGACGA 421 27 1960 Antisense
TGGGACGACAGCTCATTGTTACCTA 106 555 1977 Antisense
TCCATCCAACTTTATTAGGCCTCGA 521 587 2006 Antisense
TAGGCCTCGAAGATGTCAAGTTTGA 303 651 2021 Antisense
GGAACAGGCTTTCGATCTTTACATC 249 529 2080 Antisense
TTGGCGTGTCGAGTACGGTAGCACA 29 707 2216 Antisense
GCAATGATCAAGGCCCTCTCTAAAC 399 321 2254 Antisense
CTCTAAACACGACCTCACCAATAAA 161 229 2271 Antisense
GTTCCTTCCTTGGTTTATCGAATAT 269 441 2303 Antisense
GTCAGTATGGATCATTCTGCATCAG 79 467 2348 Antisense
Sequence Source Affymetrix Proprietary Database