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[191951_at] UDP-glucuronosyltransferase

Description T19H12.10 /REP_DB=WormBase Gene ID /WP=CE13770 /TR=O01616 /GB=AAC69033.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 29      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 387.9
(3)
P 		305.9
(0.4)
P 		202.1
(-3)
P 		284.8
(-0.3)
P 		186
B 394.6
(3)
P 		252.3
(-1.4)
P 		201.3
(-3)
P 		353
(1.7)
P 		193
C 350.4
(0.6)
P 		313.2
(-0.2)
P 		178
(-3)
P 		468.6
(3)
P 		291
avr 377.6
(3) 		290.5
(0.2) 		193.8
(-3) 		368.8
(2.7) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 103.2
(-3)
P 		174.8
(-2.2)
P 		137
(-2.6)
P 		148.3
(-2.5)
P 		330.6
(-0.6)
P 		675.4
(3)
P 		572
B 168
(-2.5)
P 		201.5
(-2.2)
P 		105.9
(-3)
P 		138
(-2.7)
P 		319.8
(-1.2)
P 		813.6
(3)
P 		708
C 135.8
(-2.9)
P 		189.8
(-2.5)
P 		126.9
(-3)
P 		171.1
(-2.6)
P 		313.7
(-1.4)
P 		829.3
(3)
P 		702
avr 135.7
(-2.9) 		188.7
(-2.4) 		123.3
(-3) 		152.5
(-2.7) 		321.4
(-1.2) 		772.8
(3) 		650
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 141.2
(3)
P 		66.4
(-1.5)
P 		52.8
(-2.3)
P 		41.7
(-3)
P 		100
B 125.8
(3)
P 		62.3
(-1.8)
P 		46.7
(-3)
P 		75.2
(-0.8)
P 		79
C 116
(3)
P 		90
(0.1)
P 		62
(-3)
P 		79
(-1.1)
P 		54
avr 127.7
(3) 		72.9
(-1.4) 		53.8
(-3) 		65.3
(-2.1) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 19
(-3)
P 		62.2
(-1.2)
P 		29.8
(-2.6)
P 		37.6
(-2.2)
P 		99.8
(0.3)
P 		164.4
(3)
P 		145
B 58.5
(-2.3)
P 		67.1
(-2.1)
P 		25.7
(-3)
P 		36.6
(-2.8)
P 		130
(-0.7)
P 		303.4
(3)
P 		278
C 50.3
(-2.6)
P 		57.9
(-2.4)
P 		32.3
(-3)
P 		34.4
(-2.9)
P 		101.5
(-1.3)
P 		277.6
(3)
P 		245
avr 42.6
(-2.6) 		62.4
(-2.1) 		29.3
(-3) 		36.2
(-2.8) 		110.4
(-0.8) 		248.5
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15056
Sequence Type Exemplar sequence
Representative Public ID T19H12.10 NCBI
Target Description T19H12.10 /REP_DB=WormBase Gene ID /WP=CE13770 /TR=O01616 /GB=AAC69033.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071910 NCBI Caenorhabditis elegans T19H12.10 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000027982 ENSEMBL cdna:SNAP chromosome:CEL140:V:4891319:4894370:-1 11/11 None
GENEFINDER00000027988 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4892230:4894762:-1 11/11 None
T19H12.10 ENSEMBL cdna:known chromosome:CEL140:V:4892415:4894885:-1 gene:T19H12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4892441-4894762(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-11
Ensembl T19H12.10
Entrez Gene 178882 Entrez gene
SwissProt O01616 EMBL-EBI
WormBase CE13770 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69033 Udp-glucuronosyltransferase protein 11 [Caenorhabditis elegans] ref|NP_504311.1| T19H12.10 [Caenorhabditis elegans] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.0E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.0E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504311.1 1 500-522
T19H12.10 1 500-522
SNAP00000027982 1 398-420
GENEFINDER00000027988 1 500-522
Sequence
Target Sequence 
>C. ELEGANS:191951_AT
agctatttgtaacgcatggaggactgggaagtacaatggaagttgcttacactggaaaac
ctgctctgatggtcccgattttcggagatcagcccatgaatgcggatatgcttgccaggc
acggaggagctattgcatatgataaatttgatttggtagatgggaaaaagctgactgaaa
ctgttcgagatttggtgacaaatccgaagtatgagcaaaaggccaaggaattgctagatg
tgctcaccaatcaaccaattgatccagtaatgaatttgatgaagcatttggagtttgcga
taaaattcccaaatctgcgatctcaaattcctgaaattaatcaagttggaccaattgctc
attattacctagatgtcattgtattcctaatttttgtatcaattattacagcttacatca
gtttccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTATTTGTAACGCATGGAGGACT 319 79 1133 Antisense
CTGGAAAACCTGCTCTGATGGTCCC 245 241 1184 Antisense
TGCTCTGATGGTCCCGATTTTCGGA 233 581 1194 Antisense
GATTTTCGGAGATCAGCCCATGAAT 315 429 1209 Antisense
GAATGCGGATATGCTTGCCAGGCAC 584 329 1230 Antisense
GCTTGCCAGGCACGGAGGAGCTATT 34 307 1242 Antisense
GCTAGATGTGCTCACCAATCAACCA 664 301 1365 Antisense
CAAATCTGCGATCTCAAATTCCTGA 511 193 1442 Antisense
GGACCAATTGCTCATTATTACCTAG 206 523 1480 Antisense
GATGTCATTGTATTCCTAATTTTTG 290 407 1504 Antisense
ATTACAGCTTACATCAGTTTCCAAA 359 13 1537 Antisense
Sequence Source Affymetrix Proprietary Database